Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00990 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAGCTTGGGGTAACTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGAGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAGGCTTCACCGGAGGAATGTTCAATCAATCAGCCACTCCCTGGTGGACCACTCTACCCGCCGGTGGAAGTAGAACCATCACCACCACCGCCGCCGCCAACCACTGGAAGAAGAAAACGACGGCGGACCCGGAGCACGAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCCGTGGAACGTAACCGACGGAAGCAAATGAATGAGTATCTCGCCGTTCTCCGATCATTAATGCCGTCTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAAGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAGGAACAAACTGGCACCTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACTCGCCCCATGACTCATCCATCGCTCACTCCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCTCAAAAACGCCCAAGACAGCTCCTTAAAATGGTAGCTGGATTTCAAAGCTTGAGACTCACTATTCTTCATCTCAATGTCACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATTAAGATTGAAGAAGGATGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATCCTACTCTCTATTCAAGAGGAAGCTGTTTTCAGCTGA 930 45.27 MMALETVVYPQDTFSYVCRDFCSYGGGAWGNYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPLYPPVEVEPSPPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNSPHDSSIAHSQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKIEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18357345 18359404 - Lsi08G009900.1 Lsi08g00990 668916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00990 309 MobiDBLite consensus disorder prediction 75 95 - -
Lsi08g00990 309 Pfam Helix-loop-helix DNA-binding domain 116 167 IPR011598 GO:0046983
Lsi08g00990 309 Gene3D - 109 179 IPR036638 GO:0046983
Lsi08g00990 309 PANTHER MAX DIMERIZATION, MAD 2 308 - -
Lsi08g00990 309 SMART finulus 121 172 IPR011598 GO:0046983
Lsi08g00990 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 183 IPR036638 GO:0046983
Lsi08g00990 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 166 IPR011598 GO:0046983
Lsi08g00990 309 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 2 308 - -
Lsi08g00990 309 MobiDBLite consensus disorder prediction 62 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01454 Lsi-Chr5:22392843 Lsi08g00990 Lsi-Chr8:18357345 3.82E-31 dispersed
Lsi05g02236 Lsi-Chr5:28977388 Lsi08g00990 Lsi-Chr8:18357345 2.64E-56 dispersed
Lsi06g00151 Lsi-Chr6:1608957 Lsi08g00990 Lsi-Chr8:18357345 1.25E-76 dispersed
Lsi08g00990 Lsi-Chr8:18357345 Lsi11g00523 Lsi-Chr11:5508378 2.16E-74 dispersed
Lsi08g00990 Lsi-Chr8:18357345 Lsi05g01835 Lsi-Chr5:25630566 1.14E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25779 PF00010 HLH 4.20E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00990 - - csv:101218813 517.309