Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00991 ATGACCTTTCCATCCTTTTCCTTCCTCAATCATGTCCTCATCCATTTCATTCTCCTCTCCCAAATCTCCCTCGCCGCCGCTCAATCCGGAGCACCCCCAGATATGTACCCTTTCAAACAGACCATCAGCAAACGAATGGCTGTCATTTTGATTGTTCTCGTTTGCTTCTTCATCGTTCTCGCCGTTCTCTCCGTCTACACCCGTCAGTGCACTGACCAACGCTTCGGCGGTCGTCTCCTCCTCTCCACTGCCCAAGATGGAACCAACGCCCGATCCAGAAGAGCGGCGCGTGGCCTCGACGCGGCTGTTATAGCTACTTTCCCAACCTTTGTGTACTCCAACGTCAAGGATCTCAAAATTGGGAAAGGCTCGTTGGAGTGCGCCATTTGTTTATCCGAATTCGAAGATGATGATACGCTGCGTTTGTTGCCGAAATGCAGCCACGTCTTCCACTCCGATTGCATCGACGCTTGGTTGGTCTCTCACTCTACTTGCCCTGTTTGCCGCGCCAGCCTTGTCCCTAAACCCGGGGATATATCCTTCGCTGCTCTGCTCAATTCCGATTCGGGAAATAACGGGGATGGACACGATGAAGGAAATCGAGGGACTGGATCGGAAACTACTCAGGTGGTTGTTCGAATTCCGGAGGGGAATCAGGGTCAGGATGTGAATTTGATAACCCCAAATCAGGGATTGAATCAGAACGGTCCAATTCGGTCGCGATCGTCGGGATGGAGATTAAGCGGATTGTTTCCTCGGTCCCACTCGACGGGTCATTCTCTGGTTCAACGGGGAGAGGATTACGAGAGATATACGTTGAGATTGCCGGAGGAGGTGAGAAGTGAGCTGATGAATTCGAATTTGAACCGGGCAAGGAGCTGCGTGGCGTTTCCGAGGGTGCAGAGTTCGAGACAGGGGTACCGGAGTGAGTTGGGGAAGATTGGGTTTGTGGGAAATCGGAGCCGCAGTGGGCGGTCGGAGTGGCGGACATTGTTACCGACGACGCCGTTGTTCAGAAGGGAGGGTTCGAGAAAGGATGTGAATGGAGATGGCGGTGGACGGCCGTTCGCACGCTTGCGGCCTAATGGGGATGGTCAAAGTCAACAATAA 1110 53.15 MTFPSFSFLNHVLIHFILLSQISLAAAQSGAPPDMYPFKQTISKRMAVILIVLVCFFIVLAVLSVYTRQCTDQRFGGRLLLSTAQDGTNARSRRAARGLDAAVIATFPTFVYSNVKDLKIGKGSLECAICLSEFEDDDTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLNSDSGNNGDGHDEGNRGTGSETTQVVVRIPEGNQGQDVNLITPNQGLNQNGPIRSRSSGWRLSGLFPRSHSTGHSLVQRGEDYERYTLRLPEEVRSELMNSNLNRARSCVAFPRVQSSRQGYRSELGKIGFVGNRSRSGRSEWRTLLPTTPLFRREGSRKDVNGDGGGRPFARLRPNGDGQSQQ 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18386724 18387833 + Lsi08G009910.1 Lsi08g00991 668917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00991 369 PANTHER RING FINGER DOMAIN-CONTAINING 7 301 - -
Lsi08g00991 369 SMART ring_2 127 168 IPR001841 -
Lsi08g00991 369 MobiDBLite consensus disorder prediction 340 369 - -
Lsi08g00991 369 CDD RING-H2_PA-TM-RING 126 169 - -
Lsi08g00991 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 174 IPR013083 -
Lsi08g00991 369 PANTHER RING-H2 FINGER PROTEIN ATL11 7 301 - -
Lsi08g00991 369 SMART FANCL_C_2 123 176 - -
Lsi08g00991 369 Pfam Ring finger domain 126 169 IPR001841 -
Lsi08g00991 369 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Lsi08g00991 369 SUPERFAMILY RING/U-box 126 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00991 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - csv:101209245 635.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02261 Lsi08g00991 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00752 Lsi-Chr5:10388968 Lsi08g00991 Lsi-Chr8:18386724 1.49E-14 dispersed
Lsi08g00926 Lsi-Chr8:17650994 Lsi08g00991 Lsi-Chr8:18386724 1.22E-17 dispersed
Lsi08g00991 Lsi-Chr8:18386724 Lsi10g01444 Lsi-Chr10:18531038 2.52E-27 dispersed
Lsi11g01683 Lsi-Chr11:25045538 Lsi08g00991 Lsi-Chr8:18386724 9.32E-24 dispersed
Lsi10g01215 Lsi-Chr10:16422895 Lsi08g00991 Lsi-Chr8:18386724 1.87E-24 transposed
Lsi11g00524 Lsi-Chr11:5546761 Lsi08g00991 Lsi-Chr8:18386724 1.52E-85 transposed
Lsi01g00796 Lsi-Chr1:6261376 Lsi08g00991 Lsi-Chr8:18386724 6.56E-34 wgd
Lsi04g02261 Lsi-Chr4:29645465 Lsi08g00991 Lsi-Chr8:18386724 1.66E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00991 Lsi_Chr08 FPKM 19.718687 21.771305 1.382309 1.633833 12.641572 10.981171 11.399165 5.371972 4.879913 4.059822