Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00993 ATGGGGAGTATTATCAATCAGAGAGAAGATTTTGTATCCAAATTTTGGGTTGAAACTCAGAAGCTATGGCTAATCGTCGGCCCTTCCATTTTCAGCCGTATCTCTTCTTACACCATGAACATCATCACCCAAGCTTTCGCTGGCCGTTTAGGCGATGTCCAACTCGCTTCCATTTCCATCGCCAACACAGTAATTGTCGGCTTCAATTTCGGCCTCTTATTAGGGATGGCAAGTGCATTAGAGACACTGTGTGGGCAAGCATATGGAGCAAGGAGATACCATATGTTAGGAATTTACTTGCAACGTTCATGGGTAGTACTTTCCCTTTGTTGTTTCTTGTTACTCCCTTTTTACTTTTACGCTACACCTGTTCTGAAACTGCTTGGCCAAACCGATGATGTAGCAGAGCAATCAGGGGTAGTAGCGCTTTGGTTAATACCACTTCATTTCAGCTTTGCGTTTCAGTTTCCGTTGCAGAGGTTTTTGCAATGCCAACTGAAAACCCAAGTGATTGCTTGGGTTTCTTTTGTAGGATTAGCTATGAATGTTTTGGCTAGTTGGGTTTTCATATATGTATTGGAATATGGAGTAATTGGAGCAGCCATAGCTTTAGACATTTCTTGGTGGGTTCTGGTTTTGGGATTGTATATCTATACTGTTGGTGGTTGGTGCCCTTTAACTTGGACTGGCTTCTCTTCTCAAGCCTTTCAAGGTCTCTGGGATTTCACTAAGCTCTCCATTTCTGCTGGCCTCATGCTCTGCTCGGAGAATTGGTATTACAGGATATTAGTACTGATGACAGGGAAGTTAAAGAATGCTACTATTGCTGTAGATGCATTATCCATATGTATGAGCATCAATGGATGGGAGATGATGATTCCTTTAGCATTCTTTGCTGGCATTGGCAGTAGTGTGGTGGAGGCTGTGGATTCACTCTCAAGTTTGCTAGCCGTCACCATTCTCTTGAACAGTATCCAACCCGTTCTTTCAGGGGTGGCAGTTGGATCAGGTTGGCAATCTTGGGTTGCATACATAAATCTTGGCTGCTATTATCTTATTGGCCTCCCCCTTGGTTTCATCATGGAATGGGTTTTCCACTCTGGGGTGCTCGGAATTTGGGGTGGAATGATATTTGGTGGCACTGCAGTTCAAACAATAATATTAGTCATCATCACCATGAGAACTAATTGGGAACAAGAGGCGCAGAAAGCACAAATGCATGTTGAAGAATGGTCCAGTCCCCAAGAAAATGAGAAGCCTCTTCTCGCCTAA 1272 43.55 MGSIINQREDFVSKFWVETQKLWLIVGPSIFSRISSYTMNIITQAFAGRLGDVQLASISIANTVIVGFNFGLLLGMASALETLCGQAYGARRYHMLGIYLQRSWVVLSLCCFLLLPFYFYATPVLKLLGQTDDVAEQSGVVALWLIPLHFSFAFQFPLQRFLQCQLKTQVIAWVSFVGLAMNVLASWVFIYVLEYGVIGAAIALDISWWVLVLGLYIYTVGGWCPLTWTGFSSQAFQGLWDFTKLSISAGLMLCSENWYYRILVLMTGKLKNATIAVDALSICMSINGWEMMIPLAFFAGIGSSVVEAVDSLSSLLAVTILLNSIQPVLSGVAVGSGWQSWVAYINLGCYYLIGLPLGFIMEWVFHSGVLGIWGGMIFGGTAVQTIILVIITMRTNWEQEAQKAQMHVEEWSSPQENEKPLLA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18400199 18403095 - Lsi08G009930.1 Lsi08g00993 668919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00993 423 Pfam MatE 28 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi08g00993 423 PANTHER MULTIDRUG RESISTANCE PROTEIN 7 305 - -
Lsi08g00993 423 PANTHER MULTIDRUG RESISTANCE PROTEIN 304 409 - -
Lsi08g00993 423 CDD MATE_eukaryotic 18 403 IPR045069 GO:0042910|GO:1990961
Lsi08g00993 423 PANTHER PROTEIN DETOXIFICATION 7 305 - -
Lsi08g00993 423 PANTHER PROTEIN DETOXIFICATION 304 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00993 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218581 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00819 Lsi-Chr5:12847361 Lsi08g00993 Lsi-Chr8:18400199 8.56E-162 dispersed
Lsi08g00993 Lsi-Chr8:18400199 Lsi11g01454 Lsi-Chr11:23086249 7.96E-111 dispersed
Lsi04g00584 Lsi-Chr4:5357974 Lsi08g00993 Lsi-Chr8:18400199 4.87E-11 transposed
Lsi09g01579 Lsi-Chr9:23929254 Lsi08g00993 Lsi-Chr8:18400199 4.14E-89 transposed
Lsi01g00797 Lsi-Chr1:6262876 Lsi08g00993 Lsi-Chr8:18400199 3.12E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00993 Lsi_Chr08 FPKM 6.976851 7.326435 3.657244 4.129994 5.753636 5.570145 5.161033 3.149081 3.188736 3.310991