Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00997 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAACTACTTTCATCTGTAGGCGTAGAGTCGTCCATTGATCTACGATTCCCGCTTGGAAAAGTTTCATCGTTACGCCAGTTTTTTTCTTGTGCCCGAGCGTTGCAAGCATTTCCTTCTGCCGTCGGAAAAGCTCCTGACTTTGCCACAGCATTACCGGGAAGTAGATGTTTCATACATGCCACAGGCTCATGTCATTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACACAATGCCACTCGAGAAGAGATTAAAAAGGCGTACCATGCGTTGGCGAAAAAGTGCCATCCGGATGCAAATAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGCTAGCTGTTTTCTTTTTACTGACATGTTTGTACTGTGTATCTATGTGGCTGAAGAGGCGTGGTGGAGAATTTGAGAATGTAGGGTATGGTGCTGGTGACGCAGAGGGGTTTAGCTATTCTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTTGACCTGTCATTATCTTTTACCGAAGCTGCAAAAGGATGCACGAAGCATTTGTCCTTTGATGCTTTTGTTCCTTGTGACTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACAAAAAGAAGATGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCATTTACTACGACATGCACCACTTGCAAAGGATCGGGTCAAATTATTAAGGAATTGTGCGTACAATGCAGGGGAATGGGGGTTGTGGAGGGTGTCAAGGAGGTTACAGTTACTATACCTGCTGGGGTTGAGTCTGGAGATACCATTCGTGTGCCAGAAGCTGGTAATAGTGGTGGACGAGAAAATCATCCTGGCAAGTTGATCATTAAATTGAAGGCAAACAACCACTTACATTTTCTTCGGCTTACTTTAGCAATATCCTTGTAA 1074 44.6 MKRLGWLGLCRRQLLSSVGVESSIDLRFPLGKVSSLRQFFSCARALQAFPSAVGKAPDFATALPGSRCFIHATGSCHSIERDYYEILGVQHNATREEIKKAYHALAKKCHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQLAVFFLLTCLYCVSMWLKRRGGEFENVGYGAGDAEGFSYSYRTHFSDSFQKIFSEIFEHETSRFASDIQVDLSLSFTEAAKGCTKHLSFDAFVPCDSCYGRGYPVNATKRRCPTCRGLGRVTIPPFTTTCTTCKGSGQIIKELCVQCRGMGVVEGVKEVTVTIPAGVESGDTIRVPEAGNSGGRENHPGKLIIKLKANNHLHFLRLTLAISL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18467722 18471950 - Lsi08G009970.1 Lsi08g00997 668923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00997 357 CDD DnaJ 82 136 IPR001623 -
Lsi08g00997 357 SUPERFAMILY HSP40/DnaJ peptide-binding domain 211 345 IPR008971 GO:0006457|GO:0051082
Lsi08g00997 357 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 40 350 - -
Lsi08g00997 357 Gene3D - 211 340 - -
Lsi08g00997 357 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Lsi08g00997 357 SUPERFAMILY Chaperone J-domain 81 150 IPR036869 -
Lsi08g00997 357 SMART dnaj_3 81 139 IPR001623 -
Lsi08g00997 357 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Lsi08g00997 357 Gene3D DnaJ domain 79 210 IPR036869 -
Lsi08g00997 357 ProSiteProfiles Zinc finger CR-type profile. 227 301 IPR001305 GO:0031072|GO:0051082
Lsi08g00997 357 Gene3D - 270 304 - -
Lsi08g00997 357 Gene3D - 236 269 - -
Lsi08g00997 357 CDD DnaJ_zf 240 296 IPR001305 GO:0031072|GO:0051082
Lsi08g00997 357 Pfam DnaJ domain 82 144 IPR001623 -
Lsi08g00997 357 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 40 350 - -
Lsi08g00997 357 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 227 298 IPR036410 -
Lsi08g00997 357 Pfam DnaJ C terminal domain 213 350 IPR002939 -
Lsi08g00997 357 PRINTS DnaJ domain signature 119 139 IPR001623 -
Lsi08g00997 357 PRINTS DnaJ domain signature 84 102 IPR001623 -
Lsi08g00997 357 PRINTS DnaJ domain signature 102 117 IPR001623 -
Lsi08g00997 357 Pfam DnaJ central domain 240 296 IPR001305 GO:0031072|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00997 - - - csv:101208756 550.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00414 Lsi-Chr7:4445902 Lsi08g00997 Lsi-Chr8:18467722 9.51E-37 dispersed
Lsi08g00997 Lsi-Chr8:18467722 Lsi04g00168 Lsi-Chr4:1845547 1.66E-22 dispersed
Lsi08g00997 Lsi-Chr8:18467722 Lsi10g00078 Lsi-Chr10:1318094 3.66E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00997 Lsi_Chr08 FPKM 1.011546 0.659278 8.883871 8.395166 80.211853 71.380768 73.764397 1.17652 0.929815 1.020531