Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00998 ATGATATTCCTTCGCGCCAATGCGCAAGCAAAGCAATCGATGACGCGGTGGCTCCGCGCTTCAGAGGTCGCCGCTCGAGCGGAATCGGTGATGAAGACGTCTCTCCGCTCCGGCACCGGACGAATTCGCTTCCTTCTTCAAGCACGGAGGCCTATATCGTCACTTACTTCGTCAGTCGACTCTTTGGGCACCATTTCTGTTGTATCTCCCAAAACCCTACAAAATGTTGGCGACGATGGCAACTTCAAGCAGGAACTTATGAAGTTCAAGTTGCCTCGGAGTAGCGTGACCACCGTGCTTCAGAGTGGTAACGGTGAACCTCAAAGGACCTCAATCACTAAGCTCCGGCGTCTTGTCAAGAAGCTCTGCAAATCGAAGCGCTTTGAGCGTGCACTAGAGGTACTAGTGTTGATGGAAACTCGAGATAATTTGCGCATGTCCCCGGCTGAACATGCTCTCAGATTGGAATTGACAATCAAAGTGCACGGTTTACTGAAAGCTGAAGAGTACTTCAATCAATTGCCCACCATAGCCTCTCAGAAAGCTTCATCTCTCCCTCTTCTTCATGGTTATGTCAAAGAGAGGAACACTGAAAAAGCTGAGGCTTTCATGGTGAAGCTAAGGAACTTGGGACTGGTTGTGGACCCCCATCTTTACAATGAGATGATGAAACTGTATGTGGCCACATCTCAAAATGAGAAAGTTCCTCTTGTTATAAGAGACATGAAGCAAAATCAAATACAGAGAAATGTTCTCTCTTACAACCTTTGGATGAATGCTTGCATTGAGTTATATGGGGTTGGGTCAATGGAGCTGGTCTTTGAAGAAATGCTGACTGATAAGAACGTTCAAGTGGGATGGAGCACTCTGTCTACCCTGGCTAAAGTTTACATACAGGAAGGCCTTGTTGACAAAGCGTTTGCAGCTTTAAAAGATGCAGAGAAGAAGCTATCCCCATGTAACAGGCTTGGATATTTCTTCTTAATCACATTATATGCCTCTTTGAAGGATAAGAAGGGAGTTTTTCGAGTTTGGAGAGCTAGTAAAGCTGTAAGTGGTAGACCCACTTGTGCTAATTACATGTGTATATTGCTGTGTTTGGTGAAGCTAGGAGACATCAATGAGGCAGAGAAAGTATTTAAGGAATGGGAGTTGAATTGTCATAACTATGACATTAGAGTTTCCAATGTTCTTTTGGGTGCATATGTGAGAAATGGATTGTTAGAGAAGGCCGAGTCATTGCATATGCGCACATTGGGTAGAGGTGGCAGTCCAAATTATAAGACATGGGAGATTCTCATGGAGGGGTGGGCTTCTGGCATCCTTCAAAAATGTTGGACCATTTCCCTTGCCATGTGGCCTCAGATGAAAGGGAACACAGGAGACCTTTTTTAG 1395 45.23 MIFLRANAQAKQSMTRWLRASEVAARAESVMKTSLRSGTGRIRFLLQARRPISSLTSSVDSLGTISVVSPKTLQNVGDDGNFKQELMKFKLPRSSVTTVLQSGNGEPQRTSITKLRRLVKKLCKSKRFERALEVLVLMETRDNLRMSPAEHALRLELTIKVHGLLKAEEYFNQLPTIASQKASSLPLLHGYVKERNTEKAEAFMVKLRNLGLVVDPHLYNEMMKLYVATSQNEKVPLVIRDMKQNQIQRNVLSYNLWMNACIELYGVGSMELVFEEMLTDKNVQVGWSTLSTLAKVYIQEGLVDKAFAALKDAEKKLSPCNRLGYFFLITLYASLKDKKGVFRVWRASKAVSGRPTCANYMCILLCLVKLGDINEAEKVFKEWELNCHNYDIRVSNVLLGAYVRNGLLEKAESLHMRTLGRGGSPNYKTWEILMEGWASGILQKCWTISLAMWPQMKGNTGDLF 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18471711 18474267 + Lsi08G009980.1 Lsi08g00998 668924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00998 464 Gene3D Tetratricopeptide repeat domain 295 459 IPR011990 GO:0005515
Lsi08g00998 464 Gene3D Tetratricopeptide repeat domain 81 268 IPR011990 GO:0005515
Lsi08g00998 464 Pfam PPR repeat 118 141 IPR002885 -
Lsi08g00998 464 Pfam PPR repeat 360 383 IPR002885 -
Lsi08g00998 464 Pfam PPR repeat 396 417 IPR002885 -
Lsi08g00998 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Lsi08g00998 464 Pfam Pentatricopeptide repeat domain 207 261 IPR002885 -
Lsi08g00998 464 PANTHER OS02G0796400 PROTEIN 54 438 - -
Lsi08g00998 464 PANTHER OS12G0527900 PROTEIN 54 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00998 - - - bhj:120075607 774.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00745 Lsi-Chr2:6846497 Lsi08g00998 Lsi-Chr8:18471711 5.11E-66 dispersed
Lsi08g00998 Lsi-Chr8:18471711 Lsi11g01547 Lsi-Chr11:23817757 3.75E-50 dispersed
Lsi03g00729 Lsi-Chr3:9811701 Lsi08g00998 Lsi-Chr8:18471711 2.45E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g471 . . . . . . . . Cmo05g00550 . . . . . Sed04g0176 . . Bhi04g00800 Tan02g2436 Cmetu03g0383 . Hepe10g0460 . Lcy13g1510 Cla08g01140 Cam08g1599 Cec08g1170 Cco08g1297 Clacu08g1299 . Cre08g1082 . . Cone17ag1195 . . . . Cme03g01832 . . . Bda13g01373 . Bpe14g00471 . . . . . . Cma05g00521 Car05g00472 . Cpe11g00462 . . . . . . . . . . . . . . . Lsi08g00998 Csa02g02182 Chy03g01335 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012851 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00998 Lsi_Chr08 FPKM 8.216355 10.026043 10.46888 9.373235 1.501573 1.554434 1.225673 3.374335 5.384518 4.922239