Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01001 ATGAGTTCATTCTCCCCTCCCCTTTCTTCCCATCAACTCGTCACACCAATTCCAAAGTTCAATTTTCAGAGAATTCCAATCATGGGAACCGACGGTAAATTCCTCAGAAAGCCCAGATTTCTTTGCCTCCATGGCTTCCGTACCAGTGCAGCAATCCTCAAGAAGCAGGTCGGAAAATGGCCGGCTTCTGTCCTCGATCAACTCGATCTCGATTTTCTCGACGCTCCTTTTCCTGCCGAAGGAAAATCCGACGTCGAAGGAATTTTCGATCCTCCTTATTTCGAGTGGTTTCAATTCAGTCCAGAATTTACAGAATATAGGAATTTCGACGAGTGTCTCTCATTCATTGAGGATTACATGCTTAAACACGGACCATTTGATGGATTCCTCGGTTTCTCACAGGGGGCGATATTATCGGCGGCTCTGCCGGGATTTCAAGCGAAGGGAATTGCTCTGACGAAAGTCCCGAAGATCAAATTCGTGATCATCGTGAGCGGTGCGAAATTCAGATCGCAATCTGTGGCGGAGAATGCTTACTCGACGGCAATTGGATGCCCATCCCTCCATTTTCTAGGTGAGGAAGACTTCTTAATGCCCCATGGACAGAAGCTTTTGGAATCATACGTAGAACCAACGATAATTAATCATCCCAAAGGCCACACAATACCAAGATTAGATGATAAAGCTTTGGAGGTTATGGAGAGTTTCATTCAGAGGATTTCAAAGACATTAGATGAGACTGAAGAATAG 750 45.2 MSSFSPPLSSHQLVTPIPKFNFQRIPIMGTDGKFLRKPRFLCLHGFRTSAAILKKQVGKWPASVLDQLDLDFLDAPFPAEGKSDVEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAALPGFQAKGIALTKVPKIKFVIIVSGAKFRSQSVAENAYSTAIGCPSLHFLGEEDFLMPHGQKLLESYVEPTIINHPKGHTIPRLDDKALEVMESFIQRISKTLDETEE 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18493973 18496698 + Lsi08G010010.1 Lsi08g01001 668927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01001 249 Pfam Serine hydrolase (FSH1) 37 227 IPR005645 -
Lsi08g01001 249 Gene3D alpha/beta hydrolase 34 243 IPR029058 -
Lsi08g01001 249 PANTHER DIHYDROFOLATE REDUCTASE 34 247 - -
Lsi08g01001 249 PANTHER ESTERASE OVCA2 34 247 - -
Lsi08g01001 249 SUPERFAMILY alpha/beta-Hydrolases 37 238 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01001 - - - csv:101217166 452.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01683 Lsi-Chr3:28090799 Lsi08g01001 Lsi-Chr8:18493973 4.72E-56 dispersed
Lsi08g01000 Lsi-Chr8:18487917 Lsi08g01001 Lsi-Chr8:18493973 2.72E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g475 . . . . . . . . Cmo05g00553 . . . . . . . . Bhi04g00803 Tan02g2441 . . Hepe10g0454 . Lcy13g1507 Cla08g01143 Cam08g1603 Cec08g1174 Cco08g1300 Clacu08g1302 . Cre08g1086 . . . . . . . Cme03g01830 Blo17g00105 . . Bda13g01372 . Bpe14g00474 . Bma02g00122 . . . . Cma05g00524 Car05g00474 . Cpe11g00463 . . . . . . . . . . . . . . . Lsi08g01001 Csa02g02185 Chy03g01333 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000767 4 3 2 2 4 4 2 3 4 3 3 3 3 3 3 4 3 3 2 4 3 1 3 4 2 3 3 3 4 3 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01001 Lsi_Chr08 FPKM 17.009323 18.614882 14.293314 17.206934 22.642179 22.225325 24.434582 15.681394 14.030951 13.117357