Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01002 ATGAATCAGACTCAGCCACAGCCTCAGCCCGATCCATCCAATCCCCTCCCTCCAAAACCGTCGCACTCCGATCATCCGGATCCAATTACCGACCATCGCTCCGGCGATTATTCTCCCTATCCCAAACTTGACCCTAGCGACGTTGCTCCACCGCCCCTGCCTGAGAACTGGAGCACCGTCCCGATGGTCTCCCAACCCCAAAATCCACCTCCACCTCCACCTCAAACTCAGCCAAACAGCGATGCTCGTGCTCCGATCTATGAGGGAAATGCCACCACTCTGCCGACTGAAGCTAATCCCTACGTTTCTGCGGCTCCAACTCATGGAAATCCTTCTTCCACCAAGCATACGGTGGATTCCGTGAAGGTGATGCTTGGAAGATGGGGAAAGAGGGCAGTTGAGGCAACCAAGAAGGCCGAGGATCTTGCTGGGAATATGTGGCAGCACTGGCCTAGCTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGGACGAAAGTTCTCGCAGAAGGTGGTTATGAGAAAATTTTTCGACAGACTTTTGAGAATACACCTGAAGAGAAGCTTCAGAAGGCATATGCATGCTACTTGTCCACATCAGCTGGTCCAGTGATGGGAACTTTGTACATATCAACGGCTAAACTTGCCTTTTGCAGTGACAATCCTCTTTCATACAAAGTGGGTGAGGAGACTCAATGGAGCCTTTACAAGGTGGTGATCCCAATACATCACCTAAAAGCAGTCAACCCATCAACAAGCAAAGCGAAACCGGCTGAAAAATTCATACAGGTTATCTCCATTGACAATCATGAATTCTGGTTTATGGGCTTTGTATCTTATGATAGTGCAGTGAAAACCCTTCAAGTAGCCCTGCATCCCAACAATCCGTTGTCTGCGTGA 900 49.78 MNQTQPQPQPDPSNPLPPKPSHSDHPDPITDHRSGDYSPYPKLDPSDVAPPPLPENWSTVPMVSQPQNPPPPPPQTQPNSDARAPIYEGNATTLPTEANPYVSAAPTHGNPSSTKHTVDSVKVMLGRWGKRAVEATKKAEDLAGNMWQHWPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSAGPVMGTLYISTAKLAFCSDNPLSYKVGEETQWSLYKVVIPIHHLKAVNPSTSKAKPAEKFIQVISIDNHEFWFMGFVSYDSAVKTLQVALHPNNPLSA 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18499192 18502194 + Lsi08G010020.1 Lsi08g01002 668928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01002 299 MobiDBLite consensus disorder prediction 8 23 - -
Lsi08g01002 299 CDD PH-GRAM_GEM 186 291 - -
Lsi08g01002 299 MobiDBLite consensus disorder prediction 64 79 - -
Lsi08g01002 299 Gene3D - 173 292 IPR011993 -
Lsi08g01002 299 MobiDBLite consensus disorder prediction 1 117 - -
Lsi08g01002 299 MobiDBLite consensus disorder prediction 92 117 - -
Lsi08g01002 299 PANTHER GEM-LIKE PROTEIN 2 28 293 IPR037848 -
Lsi08g01002 299 Pfam GRAM domain 176 290 IPR004182 -
Lsi08g01002 299 SMART gram2001c 175 252 IPR004182 -
Lsi08g01002 299 PANTHER GEM-LIKE PROTEIN 1 28 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01002 - - - csv:101216927 529.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01141 Lsi-Chr5:19175050 Lsi08g01002 Lsi-Chr8:18499192 5.25E-51 dispersed
Lsi05g01142 Lsi-Chr5:19180889 Lsi08g01002 Lsi-Chr8:18499192 7.56E-42 dispersed
Lsi07g00356 Lsi-Chr7:3791083 Lsi08g01002 Lsi-Chr8:18499192 3.78E-46 dispersed
Lsi08g01002 Lsi-Chr8:18499192 Lsi09g00856 Lsi-Chr9:9868760 1.64E-37 dispersed
Lsi01g00799 Lsi-Chr1:6285742 Lsi08g01002 Lsi-Chr8:18499192 1.77E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g478 . . . . . . . . Cmo05g00554 . . . . . Sed07g2378 . . Bhi04g00809 Tan02g2443 Cmetu10g1308 . Hepe10g0452 . Lcy13g1505 Cla08g01144 Cam08g1604 Cec08g1175 Cco08g1301 Clacu08g1303 . Cre08g1087 Cone6ag1542 Cone9ag1457 . . . . . Cme03g01828 Blo17g00103 Blo18g00113 . . Bpe02g01139 . Bma01g01388 . . . . . Cma05g00526 Car05g00475 . Cpe11g00464 . . . . . . . . . . . . . . . Lsi08g01002 Csa02g02186 Chy03g01331 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007813 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01002 Lsi_Chr08 FPKM 0.35335 0.388106 0.14932 0.263688 6.834878 7.053287 6.733143 2.331474 1.942212 1.505026