Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01003 ATGGAATTCGACGAAGAGAACGACGATGAAATAATGGAAGAGATGCCAATCGCCAGTCACCACTACGACTCGCTCAGTAACTCAGCTTCAACTCGGCCAAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGTGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAACAAATTTGTTCATATCGTGGGCCCACCCCACACCCATCTGCTTACGTGTACTTAACGGGGGCCCCAGTTCAACAGAGGGCGTTGGCGTTGCCGGCAGCGGCGTCGGGGAGGGAGGAGGATGATACATCAAATCCGAGTAGTAGCGGTGGCGGAGGAGGCGGCGGTGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTCAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTTTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.54 MEFDEENDDEIMEEMPIASHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQQICSYRGPTPHPSAYVYLTGAPVQQRALALPAAASGREEDDTSNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18507811 18508548 - Lsi08G010030.1 Lsi08g01003 668929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01003 245 MobiDBLite consensus disorder prediction 148 181 - -
Lsi08g01003 245 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Lsi08g01003 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 40 244 - -
Lsi08g01003 245 Gene3D - 166 243 - -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 21 50 - -
Lsi08g01003 245 SUPERFAMILY Homeodomain-like 168 243 IPR009057 -
Lsi08g01003 245 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 182 238 IPR006455 -
Lsi08g01003 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 244 - -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 158 172 - -
Lsi08g01003 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 1 50 - -
Lsi08g01003 245 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01003 - - - csv:101216697 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01003 Lsi-Chr8:18507811 1.00E-58 dispersed
Lsi02g00072 Lsi-Chr2:631833 Lsi08g01003 Lsi-Chr8:18507811 1.37E-24 dispersed
Lsi02g01484 Lsi-Chr2:20585357 Lsi08g01003 Lsi-Chr8:18507811 6.46E-53 dispersed
Lsi02g01485 Lsi-Chr2:20598316 Lsi08g01003 Lsi-Chr8:18507811 2.19E-22 dispersed
Lsi08g01003 Lsi-Chr8:18507811 Lsi11g00101 Lsi-Chr11:1088377 9.81E-63 dispersed
Lsi05g00825 Lsi-Chr5:13154551 Lsi08g01003 Lsi-Chr8:18507811 1.61E-56 transposed
Lsi01g00800 Lsi-Chr1:6303712 Lsi08g01003 Lsi-Chr8:18507811 6.14E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25780 PF04770 ZF-HD_dimer 2.10E-30 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01003 Lsi_Chr08 FPKM 28.759876 35.247143 21.960493 22.302635 32.62569 34.324505 36.120464 25.437677 21.785553 22.266329