Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01003 ATGGAATTCGACGAAGAGAACGACGATGAAATAATGGAAGAGATGCCAATCGCCAGTCACCACTACGACTCGCTCAGTAACTCAGCTTCAACTCGGCCAAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGTGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAACAAATTTGTTCATATCGTGGGCCCACCCCACACCCATCTGCTTACGTGTACTTAACGGGGGCCCCAGTTCAACAGAGGGCGTTGGCGTTGCCGGCAGCGGCGTCGGGGAGGGAGGAGGATGATACATCAAATCCGAGTAGTAGCGGTGGCGGAGGAGGCGGCGGTGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTCAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTTTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 738 50.54 MEFDEENDDEIMEEMPIASHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQQICSYRGPTPHPSAYVYLTGAPVQQRALALPAAASGREEDDTSNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18507811 18508548 - Lsi08G010030.1 Lsi08g01003 668929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01003 245 MobiDBLite consensus disorder prediction 148 181 - -
Lsi08g01003 245 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Lsi08g01003 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 40 244 - -
Lsi08g01003 245 Gene3D - 166 243 - -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 21 50 - -
Lsi08g01003 245 SUPERFAMILY Homeodomain-like 168 243 IPR009057 -
Lsi08g01003 245 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 182 238 IPR006455 -
Lsi08g01003 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 244 - -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 158 172 - -
Lsi08g01003 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Lsi08g01003 245 MobiDBLite consensus disorder prediction 1 50 - -
Lsi08g01003 245 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01003 Lsi-Chr8:18507811 1.00E-58 dispersed
Lsi02g00072 Lsi-Chr2:631833 Lsi08g01003 Lsi-Chr8:18507811 1.37E-24 dispersed
Lsi02g01484 Lsi-Chr2:20585357 Lsi08g01003 Lsi-Chr8:18507811 6.46E-53 dispersed
Lsi02g01485 Lsi-Chr2:20598316 Lsi08g01003 Lsi-Chr8:18507811 2.19E-22 dispersed
Lsi08g01003 Lsi-Chr8:18507811 Lsi11g00101 Lsi-Chr11:1088377 9.81E-63 dispersed
Lsi05g00825 Lsi-Chr5:13154551 Lsi08g01003 Lsi-Chr8:18507811 1.61E-56 transposed
Lsi01g00800 Lsi-Chr1:6303712 Lsi08g01003 Lsi-Chr8:18507811 6.14E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25780 PF04770 ZF-HD_dimer 2.10E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01003 - - csv:101216697 413.305