Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01004 ATGGATTTCTTTTCAGCTTGTACTTCTGACTCTGCCATATCCATCTGCGGCTGCGATTCCTTTTCTTCCCATCTCAAAATCAAACCCAAAAAACGCATTAACCCTTTTCAAATCAGGCAATTTTCTTATTCCGATCTTCTCTCTTCCACTCATTCCTTCTCTCCTGACTGTTTCTTAGGCAAAGGCAGCCACGGCGCCGTTTACAAGGCCGTTCTCGACGGCGGCAAGCTCATTGCCGCCGTCAAGCGTACCAAATTCACAAACCCATCTCCTAATTTTCACTACAATTCTTGCCAATTACCCATTAATACTCCTGCTGAAAACGAAATCGAGATCCTCTCCCGGATTCGAAACCCCAGAATCGTGAATCTCATTGGGTTTTGTGTCAATTCCAAGGACGAGAAATTGCTGGTCGTTGAGTTCATGCCCAATGGCTCTCTTTACGATCTGCTCCATTCCCAATCTAGACCGCCCAGTTGGACTCGTCGACTCCGGTTCGCCTTACAAGTGGCGAAAGCGGTTCGAGCTCTTCACACATCGAACCCGCCGGTTATTCATAGAGATATTAAGTCGTCGAATGTTTTGATCGACGGTAACTTCAACGCGCGTCTTGGGGATTTTGGTTTAGCATTGAGAGGACACGTGGAAGACGTGCGCGTGAGATGCACGCCCCCGGCTGGCACGTTGGGTTATCTTGATCCCGGGTATCTCGCACCTGCCGATTTGAGTGTGAAGAGCGACGTTTTCAGTTTTGGGATTTTGCTTTTGGAAATCCTTAGTGGTCGGAATGCTATCGACGTCCACCACAGCCCGCCGTCGGTCGTCGACTGGGCGTTGCCAATGATCAAACACGGCGACTTCGATGGGTTGTGCGACCCACGAATCGGGTCTCCCACTGACCCGGCGGTGATTCGGTGTGTGGCGGTTCTGGCGGCGAAGTGTATCCGGTCCACCGTGCAGAAGCGGCCGGATATGGCGGAGGTGGTGGAGTGTCTGAAGGCAGCTAAGAAGAAGCTGCACGTGTCGCCAATATGGTGCAATTTGAGGCGGCGGGAACGTCACGTGGAGAATCTCCAGCCGTTGATTTCGAACATTGATGAACCAGACGGTAGTGATGAGCCGGTGATGGTTTGCCGAATAGGAAACCGGAGGAATCGGAAAGTATCCAGTGTTTCGAGTACAGAGTATGGAATTAAGACGAATGGGGGAGTGGTTAGATCGAGATCGATGGGTTCGGTGAACGATATGAAATTGGGGCAAATTAATTCCATTGTCGGCGGAAGTTATTACTCTTCGTTGGGTGGCCGACGGAAGCACGGCGGCGTTGCAGTGAAAATTCCAACTATGAAACTTAGTAAATCGAGGTCGGTGGGGGTGTCAGAGAATCCGAAATTTGCAGAATTAAATCGGAGGGCGGCGGCGTTTATGCCGGAAATTGAAATGTCTAAATTGACGATTGATTGTGATGCTAAATCTGAGAATCAGATGCTTGAGAAACCGCTGTTCCAAAAATAA 1515 49.77 MDFFSACTSDSAISICGCDSFSSHLKIKPKKRINPFQIRQFSYSDLLSSTHSFSPDCFLGKGSHGAVYKAVLDGGKLIAAVKRTKFTNPSPNFHYNSCQLPINTPAENEIEILSRIRNPRIVNLIGFCVNSKDEKLLVVEFMPNGSLYDLLHSQSRPPSWTRRLRFALQVAKAVRALHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPGYLAPADLSVKSDVFSFGILLLEILSGRNAIDVHHSPPSVVDWALPMIKHGDFDGLCDPRIGSPTDPAVIRCVAVLAAKCIRSTVQKRPDMAEVVECLKAAKKKLHVSPIWCNLRRRERHVENLQPLISNIDEPDGSDEPVMVCRIGNRRNRKVSSVSSTEYGIKTNGGVVRSRSMGSVNDMKLGQINSIVGGSYYSSLGGRRKHGGVAVKIPTMKLSKSRSVGVSENPKFAELNRRAAAFMPEIEMSKLTIDCDAKSENQMLEKPLFQK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18524456 18525970 - Lsi08G010040.1 Lsi08g01004 668930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01004 504 PANTHER - 1 483 - -
Lsi08g01004 504 PANTHER OS01G0750732 PROTEIN 1 483 - -
Lsi08g01004 504 Gene3D Transferase(Phosphotransferase) domain 1 142 345 - -
Lsi08g01004 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lsi08g01004 504 Gene3D Phosphorylase Kinase; domain 1 19 141 - -
Lsi08g01004 504 SUPERFAMILY Protein kinase-like (PK-like) 34 332 IPR011009 -
Lsi08g01004 504 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Lsi08g01004 504 ProSiteProfiles Protein kinase domain profile. 53 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01004 504 SMART serkin_6 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01004 504 Pfam Protein kinase domain 59 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01004 - - - csv:101208276 850.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01186 Lsi-Chr3:22280509 Lsi08g01004 Lsi-Chr8:18524456 1.41E-123 dispersed
Lsi04g00709 Lsi-Chr4:6478326 Lsi08g01004 Lsi-Chr8:18524456 1.01E-29 dispersed
Lsi08g01004 Lsi-Chr8:18524456 Lsi07g00048 Lsi-Chr7:517257 3.94E-66 dispersed
Lsi08g01004 Lsi-Chr8:18524456 Lsi04g00457 Lsi-Chr4:4337978 3.90E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83847 PF00069 Pkinase 9.20E-37 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01004 Lsi_Chr08 FPKM 14.736704 15.633269 13.748077 11.636591 14.018307 12.30443 14.070996 20.299812 20.174267 19.546415