Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01007 | ATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCGGAAGAGAATTGCATTTTCGATAATAACGATGATGATGATGAAACAGTAGTTGAGGAGTTTGTGATGGCTCCTTATTATCTTAGAACTCGTCGGAATCGGAACCCCCACCGCGGCGGCGGTGGTGGAGGTGATGGGTTTCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCACCACTTACCTGTTGATGGGTACCTCGTGAAGTTGCAGAACGGCGAGTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGTTTCCTCTCCGCTTATGATCTACCCAAAGGCAAAGCTTGGACAATGCAGTTGCTTGCCGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGATGGAGAATGCAAGCAGTTACTCCTTTCTCGTTTATCGATCATTACCTTCGCAAGATTCACGATGACGATCTCTCTATCAAAATGTCGATCACTCGATCAATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCGTCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTAGGGAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAAATTAATCAATGACATGTTAATCTGTGGTGGTGGGACGGTGAAGGACTCGAGAGTGTCGATGTCAGAGCCTCGGAGCCCAAGCGGGGTGTTGGACGTGACGTGTTTAAGCTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG | 1080 | 44.81 | MAPSFDLAVSNLLCAEENCIFDNNDDDDETVVEEFVMAPYYLRTRRNRNPHRGGGGGGDGFPFMSDECLIEMVEKETHHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHDDDLSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAREAQSVDPERAIPLLIQQLQMERVLKCLKLINDMLICGGGTVKDSRVSMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 18603898 | 18607099 | - | Lsi08G010070.1 | Lsi08g01007 | 668933 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01007 | 359 | Pfam | Cyclin, N-terminal domain | 72 | 198 | IPR006671 | - | |
| Lsi08g01007 | 359 | SUPERFAMILY | Cyclin-like | 62 | 198 | IPR036915 | - | |
| Lsi08g01007 | 359 | Gene3D | - | 82 | 199 | - | - | |
| Lsi08g01007 | 359 | PANTHER | CYCLINS | 1 | 351 | IPR039361 | - | |
| Lsi08g01007 | 359 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 1 | 351 | - | - | |
| Lsi08g01007 | 359 | Gene3D | - | 71 | 285 | - | - | |
| Lsi08g01007 | 359 | SMART | Cyclin_C_2 | 201 | 325 | IPR004367 | - | |
| Lsi08g01007 | 359 | MobiDBLite | consensus disorder prediction | 333 | 353 | - | - | |
| Lsi08g01007 | 359 | CDD | CYCLIN | 99 | 191 | IPR013763 | - | |
| Lsi08g01007 | 359 | SUPERFAMILY | Cyclin-like | 184 | 294 | IPR036915 | - | |
| Lsi08g01007 | 359 | Pfam | Cyclin, C-terminal domain | 201 | 294 | IPR004367 | - | |
| Lsi08g01007 | 359 | SMART | cyclin_7 | 104 | 192 | IPR013763 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00952 | Lsi-Chr1:7729034 | Lsi08g01007 | Lsi-Chr8:18603898 | 1.64E-44 | dispersed | |
| Lsi03g00524 | Lsi-Chr3:6105614 | Lsi08g01007 | Lsi-Chr8:18603898 | 1.19E-42 | dispersed | |
| Lsi03g01011 | Lsi-Chr3:19453538 | Lsi08g01007 | Lsi-Chr8:18603898 | 1.73E-57 | dispersed | |
| Lsi08g01007 | Lsi-Chr8:18603898 | Lsi08g01495 | Lsi-Chr8:23110265 | 1.51E-52 | dispersed | |
| Lsi02g01730 | Lsi-Chr2:22987948 | Lsi08g01007 | Lsi-Chr8:18603898 | 3.70E-57 | transposed | |
| Lsi04g00515 | Lsi-Chr4:4784510 | Lsi08g01007 | Lsi-Chr8:18603898 | 1.11E-38 | transposed | |
| Lsi01g00802 | Lsi-Chr1:6327312 | Lsi08g01007 | Lsi-Chr8:18603898 | 4.19E-90 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01007 | K18810 | - | csv:101216206 | 637.106 |