Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01009 | ATGCCGCCAATGGGTGTGCAACTCTTTATTACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAATCCCAGATGGCATAGTGACTGGAATTCGATACAGTGGAGTCGACAACGTGCTCGAAGTTCTCAACGACGAATTTAACCGAGGGTACTGGGACCTCGTATGGAACTCATCAGCGTCCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTGATGTCATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTTGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCTTCTGGGTTCTACTCTTACGCTATTTACCAACACTTGAAAGAATGGCCTGGCTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGACCGCTCTCTGCCGAGAGGCCGAGCCCTAGCATATCCGGAGGCTGTCCTGCTCGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCTAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCTTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGATCTGGAGCCGAAAATCGGAGCTGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCAACGATCGAAGTCCAGAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAATCAACGGGGTAGTATCAGTGGTAGACTATTAGTCAATGATAGCTACGTTAGTGAAGACTTGATACCAGCAAACGGTGCGTTTGTTGGCCTGGCTCCACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAATTTTTTCATTGACGGCGTAAGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGTTCTAATTTTCTTGCTGTGGTTCAGATTTATATATATGTCACACTCATACATATTGTGATACATAAAATTGGCAGTGAGATGGACATGGGTGACATAACATATGAGCCTCCGAGACAAGGGGCTACACTGTGGGAAATAGGAATCCCAGATCGTTCAGCTGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTATGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGCCTGTGGGAAAGATACAGTGAACTGTACCCTGACACAGACTTGGTTTATACTGTTGGCACGGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCGAGCTAGACAACGTCAACAACGAAGCAACTTACAAGCTTCGGGTCGCATTGGCCTCTGCTTCTCTCGCGGAATTGCAGGTTGGAGTTAATGAGACTAAAGGAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGATAATTCGATTGCGAGACACGGCATTCATGGCCTACATTGGGTTTACGACGTGGACATTCCGGGCAACCGGCTGGTTACCGGCAGCAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGCCCTTTTCAAGCCATTATGTATGATTATGTTCGTTTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCTTTGGAATAA | 1917 | 47.47 | MPPMGVQLFITERQVTMDNGIVQVTLSIPDGIVTGIRYSGVDNVLEVLNDEFNRGYWDLVWNSSASTTGLFDVIKSTGFDVIVENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSLPRGRALAYPEAVLLVDDKYQYSCDNKDSGVHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLEPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGSISGRLLVNDSYVSEDLIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSNFLAVVQIYIYVTLIHIVIHKIGSEMDMGDITYEPPRQGATLWEIGIPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDTDLVYTVGTENGTYKGTTWQVKFELDNVNNEATYKLRVALASASLAELQVGVNETKGKPVFSSGLIGRDNSIARHGIHGLHWVYDVDIPGNRLVTGSNTIFFTQPRSTGPFQAIMYDYVRLEAPPPPSSAHPLE | 638 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 18634330 | 18641342 | + | Lsi08G010090.1 | Lsi08g01009 | 668935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01009 | 638 | CDD | RGL4_C | 456 | 626 | - | - | |
| Lsi08g01009 | 638 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 431 | 629 | - | - | |
| Lsi08g01009 | 638 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 415 | - | - | |
| Lsi08g01009 | 638 | Gene3D | - | 7 | 291 | IPR014718 | GO:0030246 | |
| Lsi08g01009 | 638 | Pfam | Polysaccharide lyase family 4, domain III | 454 | 625 | IPR029411 | - | |
| Lsi08g01009 | 638 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 431 | 629 | - | - | |
| Lsi08g01009 | 638 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 415 | - | - | |
| Lsi08g01009 | 638 | SUPERFAMILY | Galactose-binding domain-like | 452 | 626 | IPR008979 | - | |
| Lsi08g01009 | 638 | Pfam | Polysaccharide lyase family 4, domain II | 344 | 413 | IPR029413 | - | |
| Lsi08g01009 | 638 | Gene3D | - | 318 | 415 | - | - | |
| Lsi08g01009 | 638 | CDD | RGL4_N | 13 | 282 | - | - | |
| Lsi08g01009 | 638 | Pfam | Rhamnogalacturonate lyase family | 11 | 192 | IPR010325 | - | |
| Lsi08g01009 | 638 | SUPERFAMILY | Starch-binding domain-like | 319 | 412 | IPR013784 | GO:0030246 | |
| Lsi08g01009 | 638 | SUPERFAMILY | Galactose mutarotase-like | 20 | 281 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
| Lsi08g01009 | 638 | CDD | RGL4_M | 321 | 414 | IPR029413 | - | |
| Lsi08g01009 | 638 | Gene3D | - | 451 | 626 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g02290 | Lsi-Chr4:30035350 | Lsi08g01009 | Lsi-Chr8:18634330 | 5.69E-08 | dispersed | |
| Lsi05g00795 | Lsi-Chr5:11611605 | Lsi08g01009 | Lsi-Chr8:18634330 | 1.23E-91 | dispersed | |
| Lsi01g00435 | Lsi-Chr1:3660429 | Lsi08g01009 | Lsi-Chr8:18634330 | 0 | transposed | |
| Lsi01g00824 | Lsi-Chr1:6532837 | Lsi08g01009 | Lsi-Chr8:18634330 | 3.15E-49 | wgd | |
| Lsi04g02289 | Lsi-Chr4:30016075 | Lsi08g01009 | Lsi-Chr8:18634330 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01009 | K18195 | - | csv:101215720 | 1168.68 |