Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01015 ATGAATATCTCGAATTTAGTTTCTCTCTCTGTTTTCCTGTTCCCAATTTCTAGGGGCAACCGCTCTTGTGTTTCATTGGGATATTCAATGAAAGGTGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCATATGGTACAAGCCGTGCTCTTACTTCTTGGAGGTCGTGACGTGCCAACCGGTGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGGCATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCTTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAGGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGAATAACATATTAAAAACCAGAGAAAACTGTGTGCCAAGGAAGTTACAAATTCTTGGAAAGGCCACCGGGAAAGAAGGATTAACCTTCCAAAAATGTTCCTGGGATTTGACATTAGATCCATTTTCTATACCGAACATGATCATTTATAAAATTTTGAAGCCTATCATTTTGATTCACTTTGCTCCAACGAGAAACCCCCCTTTCTGGCTAAAGAAGCATTTTGCCTCTCTTACTGGCTTATTGGTTGTACAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTATAAGAGGCCCATGTATTGAGAGACAGATGGCACACAACTGTGGTGGACTGGATGACCATCCTTACCCAAGAGGATTAGGAAATAACAAAAAGTTCTCAAATCAGCTATATTAG 1023 43.11 MNISNLVSLSVFLFPISRGNRSCVSLGYSMKGEHAHLVTTHRIVGCLHDHMVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKNNILKTRENCVPRKLQILGKATGKEGLTFQKCSWDLTLDPFSIPNMIIYKILKPIILIHFAPTRNPPFWLKKHFASLTGLLVVQGTLRDLSKGGRNVSLDHMEPIRGPCIERQMAHNCGGLDDHPYPRGLGNNKKFSNQLY 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18728509 18731941 - Lsi08G010150.1 Lsi08g01015 668941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01015 340 Pfam CCT motif 94 135 IPR010402 GO:0005515
Lsi08g01015 340 ProSitePatterns GATA-type zinc finger domain. 165 192 IPR000679 GO:0006355|GO:0043565
Lsi08g01015 340 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 50 201 - -
Lsi08g01015 340 Gene3D - 161 208 IPR013088 GO:0006355|GO:0008270
Lsi08g01015 340 PANTHER GATA TRANSCRIPTION FACTOR 28 283 304 IPR045280 GO:0006355
Lsi08g01015 340 PANTHER GATA TRANSCRIPTION FACTOR 28 50 201 IPR045280 GO:0006355
Lsi08g01015 340 CDD ZnF_GATA 164 200 IPR000679 GO:0006355|GO:0043565
Lsi08g01015 340 Pfam GATA zinc finger 165 199 IPR000679 GO:0006355|GO:0043565
Lsi08g01015 340 ProSiteProfiles CCT domain profile. 94 136 IPR010402 GO:0005515
Lsi08g01015 340 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 283 304 - -
Lsi08g01015 340 SMART GATA_3 159 211 IPR000679 GO:0006355|GO:0043565
Lsi08g01015 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01015 Lsi-Chr8:18728509 Lsi02g00088 Lsi-Chr2:735922 1.58E-10 dispersed
Lsi08g01015 Lsi-Chr8:18728509 Lsi08g01017 Lsi-Chr8:18737338 1.98E-45 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25781 PF06203 CCT 1.30E-13 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01015 - - mcha:111004894 297.36