Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01017 ATGTACGGACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCCGTCCCCGACTGCGGCGACAGTGGCGAGCCCTTGGATAATCGTCTTGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGCTTCGGACTTGGCTGTTCAGCGCAGCGATGGTTCGAGCCAGCTCACACTTTCATTTCGTGGCCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCAAAATCAGAGGAATGCTGTGGACTTTCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTCCGTCAGGAGGTTGCTCTCAGAATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGCAGTGTCTCAGAGTTGGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACTAACTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCGGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCCAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 891 50.51 MYGRAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDASDLAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18737338 18743935 - Lsi08G010170.1 Lsi08g01017 668943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01017 296 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Lsi08g01017 296 MobiDBLite consensus disorder prediction 247 296 - -
Lsi08g01017 296 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 Gene3D - 196 256 IPR013088 GO:0006355|GO:0008270
Lsi08g01017 296 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Lsi08g01017 296 SMART tify_2 71 106 IPR010399 -
Lsi08g01017 296 Pfam CCT motif 138 180 IPR010402 GO:0005515
Lsi08g01017 296 Pfam tify domain 73 105 IPR010399 -
Lsi08g01017 296 PANTHER GATA TRANSCRIPTION FACTOR 28 25 274 IPR045280 GO:0006355
Lsi08g01017 296 PANTHER GATA TRANSCRIPTION FACTOR 25 25 274 - -
Lsi08g01017 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Lsi08g01017 296 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 MobiDBLite consensus disorder prediction 171 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01017 - - - csv:101214839 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00696 Lsi-Chr3:9136922 Lsi08g01017 Lsi-Chr8:18737338 1.47E-74 dispersed
Lsi08g01017 Lsi-Chr8:18737338 Lsi02g00088 Lsi-Chr2:735922 1.45E-08 dispersed
Lsi08g01015 Lsi-Chr8:18728509 Lsi08g01017 Lsi-Chr8:18737338 1.98E-45 proximal
Lsi08g01016 Lsi-Chr8:18732081 Lsi08g01017 Lsi-Chr8:18737338 2.93E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi09g01294 . 1 174 Tify Gene Family AT4G14713 52.1 1.2e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25783 PF06203 CCT 7.40E-15 CL0281 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01017 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0