Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01017 ATGTACGGACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCCGTCCCCGACTGCGGCGACAGTGGCGAGCCCTTGGATAATCGTCTTGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGCTTCGGACTTGGCTGTTCAGCGCAGCGATGGTTCGAGCCAGCTCACACTTTCATTTCGTGGCCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCAAAATCAGAGGAATGCTGTGGACTTTCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTCCGTCAGGAGGTTGCTCTCAGAATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGCAGTGTCTCAGAGTTGGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACTAACTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCGGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCCAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 891 50.51 MYGRAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDASDLAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDNSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18737338 18743935 - Lsi08G010170.1 Lsi08g01017 668943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01017 296 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Lsi08g01017 296 MobiDBLite consensus disorder prediction 247 296 - -
Lsi08g01017 296 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 Gene3D - 196 256 IPR013088 GO:0006355|GO:0008270
Lsi08g01017 296 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Lsi08g01017 296 SMART tify_2 71 106 IPR010399 -
Lsi08g01017 296 Pfam CCT motif 138 180 IPR010402 GO:0005515
Lsi08g01017 296 Pfam tify domain 73 105 IPR010399 -
Lsi08g01017 296 PANTHER GATA TRANSCRIPTION FACTOR 28 25 274 IPR045280 GO:0006355
Lsi08g01017 296 PANTHER GATA TRANSCRIPTION FACTOR 25 25 274 - -
Lsi08g01017 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Lsi08g01017 296 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Lsi08g01017 296 MobiDBLite consensus disorder prediction 171 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00696 Lsi-Chr3:9136922 Lsi08g01017 Lsi-Chr8:18737338 1.47E-74 dispersed
Lsi08g01017 Lsi-Chr8:18737338 Lsi02g00088 Lsi-Chr2:735922 1.45E-08 dispersed
Lsi08g01015 Lsi-Chr8:18728509 Lsi08g01017 Lsi-Chr8:18737338 1.98E-45 proximal
Lsi08g01016 Lsi-Chr8:18732081 Lsi08g01017 Lsi-Chr8:18737338 2.93E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25783 PF06203 CCT 7.40E-15 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01017 - - csv:101214839 540.806