Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01024 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGACTCGTCTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGCCTTCAGCTTTTACGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTATGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAACTCAGCAGCTGTAGTTTTGACAAGTAGACCTTGCTGCATTCTGCATGCATTGATTGTTAATGGTGCAATTCGCAGTCAATCTTATGATTCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTTTGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAATTTTACCTTCAGCAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCCTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTTGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACAGCTGGGGGTCTCGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCACGTTGGTTGGTGGTCACCAACCATCATCCGAGGTGACGATCGTGAAGCTGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAGATATATGGTGAGGCTGATTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCGGGGCTTCCAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGACGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAAACGAAGAAAAGGAAGCCAAACAAGAGACAGTCTCGACATCAGGGACAAGAGCCCCAGACACAGCTGGATCAACATCAAATCTTGATATTAAAACAGATGATAAAAAACCGATTTCTCCATCTGGCACTACGCCTAAGCCTTCAACAGGATCGGTATCCAACACACAGGCCCTGAATCTATCAACCAGCACTCCAGAACAAAGCAGCGCGGAAAAACCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATCTGATAGGACTGAATTCCAAGGATAATATGCCACGAGCGACTCCACCCAAAAGATCGCCCTCAGCTCCCAGTCCTGGCAGCGAGAAAGCTGATATTCCTTCAAAGAATAAGCAAGACGGCGAGAAGCCCTCTGCATCACCATCAGTGGCGAGGCCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCATTGGAAGGCTCCAAAAGAACTCTTCCAATTGAGGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCTCCCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2025 43.75 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKTRLHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTSRPCCILHALIVNGAIRSQSYDSLRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVILPSAASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRARLATPIRTVQKIYGEADLENVPFSETMYSRSGASNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQETVSTSGTRAPDTAGSTSNLDIKTDDKKPISPSGTTPKPSTGSVSNTQALNLSTSTPEQSSAEKPVTSNEIKGEKKDLIGLNSKDNMPRATPPKRSPSAPSPGSEKADIPSKNKQDGEKPSASPSVARPPLEENIVLGVALEGSKRTLPIEEDLDSKEISTQRNGSEFPPNSKDMKDGQMPAVPGATKND 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18805650 18812730 + Lsi08G010240.1 Lsi08g01024 668950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01024 674 MobiDBLite consensus disorder prediction 457 674 - -
Lsi08g01024 674 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 411 666 IPR045042 -
Lsi08g01024 674 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 412 IPR045042 -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 552 566 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 513 551 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 487 504 - -
Lsi08g01024 674 Gene3D - 316 371 IPR023408 -
Lsi08g01024 674 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 411 666 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 460 486 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 630 644 - -
Lsi08g01024 674 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 412 - -
Lsi08g01024 674 Gene3D - 210 314 - -
Lsi08g01024 674 Pfam Mechanosensitive ion channel 257 431 IPR006685 GO:0016020|GO:0055085
Lsi08g01024 674 SUPERFAMILY Sm-like ribonucleoproteins 300 370 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00779 Lsi-Chr5:11119660 Lsi08g01024 Lsi-Chr8:18805650 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01024 K22047 - csv:101213477 1149.81