Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01024 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGACTCGTCTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGCCTTCAGCTTTTACGGAGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTATGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAACTCAGCAGCTGTAGTTTTGACAAGTAGACCTTGCTGCATTCTGCATGCATTGATTGTTAATGGTGCAATTCGCAGTCAATCTTATGATTCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTTTGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAATTTTACCTTCAGCAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCCTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTTGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACAGCTGGGGGTCTCGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCACGTTGGTTGGTGGTCACCAACCATCATCCGAGGTGACGATCGTGAAGCTGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAGATATATGGTGAGGCTGATTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCGGGGCTTCCAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGTGACGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAAACGAAGAAAAGGAAGCCAAACAAGAGACAGTCTCGACATCAGGGACAAGAGCCCCAGACACAGCTGGATCAACATCAAATCTTGATATTAAAACAGATGATAAAAAACCGATTTCTCCATCTGGCACTACGCCTAAGCCTTCAACAGGATCGGTATCCAACACACAGGCCCTGAATCTATCAACCAGCACTCCAGAACAAAGCAGCGCGGAAAAACCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATCTGATAGGACTGAATTCCAAGGATAATATGCCACGAGCGACTCCACCCAAAAGATCGCCCTCAGCTCCCAGTCCTGGCAGCGAGAAAGCTGATATTCCTTCAAAGAATAAGCAAGACGGCGAGAAGCCCTCTGCATCACCATCAGTGGCGAGGCCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCATTGGAAGGCTCCAAAAGAACTCTTCCAATTGAGGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCTCCCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2025 43.75 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKTRLHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTSRPCCILHALIVNGAIRSQSYDSLRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVILPSAASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRARLATPIRTVQKIYGEADLENVPFSETMYSRSGASNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQETVSTSGTRAPDTAGSTSNLDIKTDDKKPISPSGTTPKPSTGSVSNTQALNLSTSTPEQSSAEKPVTSNEIKGEKKDLIGLNSKDNMPRATPPKRSPSAPSPGSEKADIPSKNKQDGEKPSASPSVARPPLEENIVLGVALEGSKRTLPIEEDLDSKEISTQRNGSEFPPNSKDMKDGQMPAVPGATKND 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18805650 18812730 + Lsi08G010240.1 Lsi08g01024 668950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01024 674 MobiDBLite consensus disorder prediction 457 674 - -
Lsi08g01024 674 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 411 666 IPR045042 -
Lsi08g01024 674 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 412 IPR045042 -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 552 566 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 513 551 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 487 504 - -
Lsi08g01024 674 Gene3D - 316 371 IPR023408 -
Lsi08g01024 674 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 411 666 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 460 486 - -
Lsi08g01024 674 MobiDBLite consensus disorder prediction 630 644 - -
Lsi08g01024 674 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 412 - -
Lsi08g01024 674 Gene3D - 210 314 - -
Lsi08g01024 674 Pfam Mechanosensitive ion channel 257 431 IPR006685 GO:0016020|GO:0055085
Lsi08g01024 674 SUPERFAMILY Sm-like ribonucleoproteins 300 370 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01024 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1149.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00779 Lsi-Chr5:11119660 Lsi08g01024 Lsi-Chr8:18805650 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g02054 . 139 631 Mechanosensitive Ion Channel Family AT4G00290 52.7 8.1e-137 484.2
Lsi05g00779 . 67 732 Mechanosensitive Ion Channel Family AT5G10490 50.9 1.8e-163 573.2
Lsi08g01024 . 10 643 Mechanosensitive Ion Channel Family AT1G58200 50.9 3.1e-163 572.4
Lsi05g00779 . 43 510 Mechanosensitive Ion Channel Family AT1G58200 56.7 1.7e-145 513.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G53470 53.5 8.5e-254 873.6
Lsi10g00812 CCT 16 770 Mechanosensitive Ion Channel Family AT1G53470 51.2 3.2e-213 738.8
Lsi10g00810 . 43 961 Mechanosensitive Ion Channel Family AT3G14810 51.5 8.4e-243 837.0
Lsi10g00812 CCT 17 770 Mechanosensitive Ion Channel Family AT3G14810 51.5 1.6e-209 726.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.7e-275 945.7
Lsi10g00812 CCT 15 770 Mechanosensitive Ion Channel Family AT1G78610 55.5 1.3e-235 813.1
Lsi10g00810 . 226 963 Mechanosensitive Ion Channel Family AT2G17000 58.4 3.7e-230 795.0
Lsi10g00812 CCT 167 769 Mechanosensitive Ion Channel Family AT2G17000 60.2 5.0e-203 704.9
Lsi11g01224 CCT 264 1022 Mechanosensitive Ion Channel Family AT2G17000 50.3 8.5e-203 704.1
Lsi10g00810 . 1 676 Mechanosensitive Ion Channel Family AT2G17010 50.6 1.2e-162 570.5
Lsi10g00812 CCT 147 536 Mechanosensitive Ion Channel Family AT2G17010 61.2 5.8e-138 488.4
Lsi04g01392 . 72 742 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.4e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01024 Lsi_Chr08 FPKM 6.402431 7.952827 2.954848 2.360611 21.306755 23.345057 22.717129 12.696701 13.672779 12.969025