Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01026 ATTCTAATCCACATCTTTCTTCTCTCTCTAAAATCTTCCTTCTTATCCGTGTGGTCGTCTTTTCTTGCAAAACCTACCACAGTTCTTGTAGTCTCCCAATCAAAGGAAGAAATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACTGCGAGACAGGTGACATTCTCTAAGCGAAGGAGGGGACTTATCAAGAAGGCGGAGGAGCTGTCGGTGCTCTGCGACGCTGAGGTGGCGCTGCTCGTCTTCTCCGCCACCGGAAAGTTCTACGAGTATTCCAGCTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACAGTAACCTTGGAAGGTTGGAATATCCATCCCTTGGGCTGCAGCTTGAAAATCAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACGACTTAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGAAGAGAAGATTATGAGTGAAATTAATGCGCTTGAGCTTAAGATGTTAAGGTTGTCGAATGAAAGAATGCCAGTGCTTGTGGATTCCGACGTTCATATGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGCCTCCTTGCGCAAATTAAGGCATAAGTTATCCGAGAGATGA 687 44.98 ILIHIFLLSLKSSFLSVWSSFLAKPTTVLVVSQSKEEMAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLVFSATGKFYEYSSSSVKDVIARYNLHSNLGRLEYPSLGLQLENQNSNHVRLNKEVADMSQRLRQMRGEDLQGLNLEDLKQLERLLEEEKIMSEINALELKMLRLSNERMPVLVDSDVHMAAEEGVSSESAANASLRKLRHKLSER 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18835515 18843495 - Lsi08G010260.1 Lsi08g01026 668952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01026 228 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 Coils Coil 170 190 - -
Lsi08g01026 228 SUPERFAMILY SRF-like 38 113 IPR036879 GO:0003677|GO:0046983
Lsi08g01026 228 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 CDD MADS_MEF2_like 39 111 IPR033896 GO:0000977|GO:0045944
Lsi08g01026 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 38 192 - -
Lsi08g01026 228 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Lsi08g01026 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 192 - -
Lsi08g01026 228 Coils Coil 124 151 - -
Lsi08g01026 228 Gene3D - 50 116 IPR036879 GO:0003677|GO:0046983
Lsi08g01026 228 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01026 Lsi-Chr8:18835515 Lsi02g00512 Lsi-Chr2:4335357 5.61E-31 dispersed
Lsi06g00024 Lsi-Chr6:234115 Lsi08g01026 Lsi-Chr8:18835515 2.84E-12 transposed
Lsi01g00825 Lsi-Chr1:6548261 Lsi08g01026 Lsi-Chr8:18835515 3.81E-26 wgd
Lsi01g00809 Lsi-Chr1:6420786 Lsi08g01026 Lsi-Chr8:18835515 5.33E-29 wgd
Lsi04g02291 Lsi-Chr4:30056403 Lsi08g01026 Lsi-Chr8:18835515 2.43E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25785 PF00319 SRF-TF 1.70E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01026 - - csv:101213234 244.588