Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01029 ATGAAAGGCGATTTTGCTCACCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTACCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCACTTTAAACACCACCAGGAACTGACCTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCGAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTCCCTGGTGGAAACGACGTCGTTGAAGCTATTTCGCGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTCAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCATCCGCCACCCCTGGCGCCACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCTGCTACCGTCTTCCCTCAAACTACTCTCTTGCCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGTGGTTTGGTCGCCGGCGCTCTAATTGCCGCCGGGACCGTTTTCGTCGTCGCTTCGTCGTTCAATAATCCTCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGTCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTACAGTTGCCACGCGCCGTCCGACGTAATTTGGGCGCCGACGGCGAGGCAACCGCCGCCCCCGCCGTACTAA 876 57.08 MKGDFAHPKSKTSNMLSKFHLSAHPFTHHPPPQQPADEPTAAVPSHFKHHQELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTLLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18881225 18882100 + Lsi08G010290.1 Lsi08g01029 668955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01029 291 Gene3D - 93 225 - -
Lsi08g01029 291 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Lsi08g01029 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Lsi08g01029 291 MobiDBLite consensus disorder prediction 222 258 - -
Lsi08g01029 291 MobiDBLite consensus disorder prediction 244 258 - -
Lsi08g01029 291 PIRSF ESCAROLA 9 290 IPR014476 GO:0003680
Lsi08g01029 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 290 IPR014476 GO:0003680
Lsi08g01029 291 CDD DUF296 94 207 IPR005175 -
Lsi08g01029 291 MobiDBLite consensus disorder prediction 1 86 - -
Lsi08g01029 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 37 290 - -
Lsi08g01029 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 209 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01029 Lsi-Chr8:18881225 Lsi05g01920 Lsi-Chr5:26394918 6.26E-50 dispersed
Lsi06g00579 Lsi-Chr6:7657690 Lsi08g01029 Lsi-Chr8:18881225 1.26E-06 transposed
Lsi04g02277 Lsi-Chr4:29799053 Lsi08g01029 Lsi-Chr8:18881225 3.03E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01029 - - bhj:120075835 465.307