Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01032 ATGGCCCTCAAAATTTTCTTCTTCTTCTTTCTAGCCCTTCTGGCTTCAAATTCCAATGCTTCCGATCTCTGCGCCTCCGGATCCGATGGCGATCTCTCCGTCATCCCCATCTATGGCAAATGCTCGCCGTTCACCGCGCCGAAATCAGAATCTTGGGTGAACACGGTGATAGACATGGCTTCAAAAGACCCAGCCCGAATTAAATATTTATCGAGCCTCGCCACCCAGAAGACGGTGGCGGCTCCGATCGCCTCCGGGCAGCAGGTTCTTAATATTGGGAATTATGTTGTGAGAGTTCAACTAGGTACTCCGGGTCAAGTAATGTATATGGTTCTTGACACCAGTAATGACGCCGCCTGGGCACCGTGCTCCGGCTGCATCGGTTGCTCCGCCACCACTTTTTCGTCTAAGAATTCTTCAACTTTTGCGACTTTAGATTGCTCTAAACCGCAGTGTAGTCAGGCTCGGGGTCTTTCCTGTCCGACCACTGGCAACGCCGAGTGCCTATTCAATCAAACGTACGGCGGCGACTCATCGTTTTCAGCCACCTTGGTTCAAGACTCTCTCCATTTGGGCGCCGACGTCATTCCAAATTTCTCATTCGGCTGCATCAGCTCCGCCTCCGGCAGTTCCATTCCGCCGCAAGGTCTAATGGGTCTCGGCCGTGGTCCCCTCTCCCTCATCTCCCAATCGGGTTCACTTTACTCCGGTCTATTCTCCTACTGCCTCCCGAGTTTCAAATCCTACTACTTCTCCGGTTCACTAAAACTCGGACCGGCCGGTCAACCAAAGTTAATCCGAACCACCCCACTACTTCACAACCCACACCGCCCCTCGCTCTACTACGTCAACCTAACCGGCATCAGTGTCGGTCGGGTCCTCGTCCCGATTCCCTCTGAGCATCTCGCATTCGACCCGAACACCGGTGCAGGAACCATAATCGACTCGGGCACAGTAATAACTCGGTTCGTGTCTCCGGTTTACACGGTGGTTCGGGACGAGTTTAGAAAGCAAGTGGGCGGTTCATTTTCGCCTTTGGGGGCTTTTGACACGTGTTTTGCAACGAGCAATGAGATTTCGGCACCTGGCATTACATTCCATTTGAGTGGATTGGACTTGAAATTGCCAATGGAAAATAGTTTGATTCATAGTAGCGCCGGTTCGTTGGCTTGTTTGGCGATGGCGGCGGCTCCGAATAATGTGAATTCAATGTTGAATGTGATTGCAAATTTGCAGCAACAAAATCATAGGATTTTGTTTGATATTACCAATTCAAAATTGGGGATTGCTCGTGAGCTTTGTAATTAG 1308 50.76 MALKIFFFFFLALLASNSNASDLCASGSDGDLSVIPIYGKCSPFTAPKSESWVNTVIDMASKDPARIKYLSSLATQKTVAAPIASGQQVLNIGNYVVRVQLGTPGQVMYMVLDTSNDAAWAPCSGCIGCSATTFSSKNSSTFATLDCSKPQCSQARGLSCPTTGNAECLFNQTYGGDSSFSATLVQDSLHLGADVIPNFSFGCISSASGSSIPPQGLMGLGRGPLSLISQSGSLYSGLFSYCLPSFKSYYFSGSLKLGPAGQPKLIRTTPLLHNPHRPSLYYVNLTGISVGRVLVPIPSEHLAFDPNTGAGTIIDSGTVITRFVSPVYTVVRDEFRKQVGGSFSPLGAFDTCFATSNEISAPGITFHLSGLDLKLPMENSLIHSSAGSLACLAMAAAPNNVNSMLNVIANLQQQNHRILFDITNSKLGIARELCN 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18922565 18925464 + Lsi08G010320.1 Lsi08g01032 668958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01032 435 ProSiteProfiles Peptidase family A1 domain profile. 95 430 IPR033121 -
Lsi08g01032 435 Pfam Xylanase inhibitor C-terminal 281 430 IPR032799 -
Lsi08g01032 435 PANTHER ASPARTYL PROTEASES 10 435 IPR001461 GO:0004190|GO:0006508
Lsi08g01032 435 PANTHER ASPARTYL PROTEASE AED3-LIKE 10 435 - -
Lsi08g01032 435 Pfam Xylanase inhibitor N-terminal 95 258 IPR032861 -
Lsi08g01032 435 SUPERFAMILY Acid proteases 91 434 IPR021109 -
Lsi08g01032 435 Gene3D Acid Proteases 69 258 IPR021109 -
Lsi08g01032 435 Gene3D Acid Proteases 260 435 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01032 - - - csv:101203506 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00023 Lsi-Chr4:335196 Lsi08g01032 Lsi-Chr8:18922565 1.42E-164 dispersed
Lsi08g01032 Lsi-Chr8:18922565 Lsi05g02127 Lsi-Chr5:28089483 2.17E-53 dispersed
Lsi08g01032 Lsi-Chr8:18922565 Lsi04g00280 Lsi-Chr4:2813202 1.83E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012953 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01032 Lsi_Chr08 FPKM 18.98708 23.20146 11.664399 12.473423 13.693817 12.157887 13.139335 3.320195 2.8437 3.624496