Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01039 ATGGCCGCCGCCGTGCCGGAAAATCTCACTCGCGAGCAATATGTGTACCTAGCGAAGCTTGCTGAGCAGGCCGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCGGGCTCTGAGCTCTCTGTTGAGGAGCGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAAAAGGAAGAGAGCCGTAAGAATGAAGAGCACGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGATGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTTATTCCCTCCGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAAGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCTGCTGCTGAGGATACTATGCTGGCTTATAGAGCTGCTCAGGATGTCGCAGTTGCAGATCTTGCACCCACTCATCCGATAAGGCTAGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGATCACTCATGCAGGCGTGAACACCACTGTACATATGAAACAATTTTACGTGGATCTTACAATTGTAGGCTTGCATATGCATATTTGGATACGTTTGTTTAA 723 46.89 MAAAVPENLTREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSDVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEDHSCRREHHCTYETILRGSYNCRLAYAYLDTFV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18981438 18983449 + Lsi08G010390.1 Lsi08g01039 668965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01039 240 PIRSF 14-3-3 6 217 IPR000308 -
Lsi08g01039 240 Gene3D - 1 237 IPR036815 -
Lsi08g01039 240 Coils Coil 17 37 - -
Lsi08g01039 240 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Lsi08g01039 240 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Lsi08g01039 240 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Lsi08g01039 240 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Lsi08g01039 240 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Lsi08g01039 240 Pfam 14-3-3 protein 17 208 IPR023410 -
Lsi08g01039 240 PANTHER 14-3-3 PROTEIN 8 208 IPR000308 -
Lsi08g01039 240 PANTHER BNAC02G00320D PROTEIN 8 208 - -
Lsi08g01039 240 SUPERFAMILY 14-3-3 protein 10 207 IPR036815 -
Lsi08g01039 240 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Lsi08g01039 240 SMART 1433_4 11 240 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01039 Lsi-Chr8:18981438 Lsi11g01569 Lsi-Chr11:23995462 5.26E-86 dispersed
Lsi04g02270 Lsi-Chr4:29715150 Lsi08g01039 Lsi-Chr8:18981438 2.25E-123 transposed
Lsi04g02246 Lsi-Chr4:29500335 Lsi08g01039 Lsi-Chr8:18981438 2.78E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01039 K06630 - csv:101222827 397.127