Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01042 ATGGCTTCCTTCCCTTCTGTTACTCTCACTGCTGCTCTCAAGCTCGAACCTCACTCAAGAAAGCGACATGCTACCACCTTTCCCCTCAACGATAAGAGTTTTCCGCATCAGAAAAATCACTCACTAATTCAATTGAATGTTGATGCGGAGCCGAAGTTCGTAGACCTACGGGAAGCTTTGTCGCTGCTAAACGATGGTACGAGAATCGAAACTTCTTACTATATTCCATTATTGCAAGAATGTTTAGATAGGAATTTAGCTGCAGAAGCGGAAATTATCCATGGACATATCGTAAAAGCTGGAACTCATGAAGACTTATTTGTAATGACTTTTCTTGTTAATGTTTATGCGAAATGTGGAGTTATGGAAAATGCTCGCAAAGTGTTTGATAATTTGCCTAGAAGAAATGTCATTGCATGGACAACTCTAGTGACTGGTTATGTTCAGAATTCACAGCCTCTGGTTGCTTTTCGAGTGTTCATAGAAATGTTGGAAGCTGGAGCTTATCCTACAAATTATACGCTCGGAATCGTGTTGAATGCTTGTTCTTCCTTGCAATCTATCGAATTCGGGAAGCAGGTTCATGCATATATCATCAAATATCATATAGATTTCGATACTAGTATTGGCAACTCTCTTTCTAGTTTCTACTCTAAGTTTGGGAGCTTGGAATTAGCAATAAGAGCCTTCCAGAAAATTAAGGAAAAGAATGTAATTTCATGGACTTCGGTTGTATCTTCTTGTTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTCTTCACCGAGATGCTCTTGGATGGCGTGGAACCAAACGAATACACTCTAACGAGTGTCTTGAGCGCTTGTTGTGTAATGTTGACATTGGGTTTAGGAGCACAGATTCATTCATTAAGCATTAAGCTTGGTTATGGTTCAAGCATACCTATAAAAAATTCTGTAATGTACTTATACCTGAAATGTGGATGGCTTACTGAGGCTCAGAAATTGTTTGAAGGTATGGAGACTCTCAATTTGATTACATGGAATGCAATGATTGCAGGCCATGCAAAAATGATGGATCTTGCTGCAGATGATCTTGCAGCTCACAAGAGTGGATCTACAGCACTTACTATTTTCCAGAAATTACATCGCTCGGGCACGAAACCCGATCTATTCACATTCTCGAGCGTTTTGAGTGTTTGTAGTAATCTAGTAGCCTTAGAACAAGGGGAACAGATTCATGGTCAGATAATCAAAAGTGGCGTTTTGGCAGATGTTGTGGTGGGAACTGCACTGGTGAGTATGTATAACAAATGTGGAAGTATTGATAAGGCGACTAAAGCTTTCTTGGAGATGCCTTCAAGAACTTTGATATCGTGGACTTCGATGATTACGGGATTTGCACGACACGGTTTGTCTCAACAAGCACTTCAGCTCTTTGAAGACATGAGATTGGCAGGAATTAGACCAAACCAGGTCACTTTTGTTGGTGTTCTATCAGCTTGTAGCCATGCTGGTTTGGTTGATGAAGCACTCTATTACTTTGAAGTAATGCAGAAGCAATACAACATTAAGCCTGTAATGGACCATTTTGCATGCTTGATTGACATGTATTTGAGGTTGGGTCGGGTTGAAGAAGCTTTCGATGTAGTCAAGAAGATGAATTTTGAGCCTAGTGAAATTATATGGTCTATGTTAATTGCTGGATGTCGAAGTCATGGGAACTCTGAATTGGGGTTTTATGCTGCCGAGCAGTTACTCAAACTCAGACCGAAAGACACCGAGACCTATGTCTCCCTATTAAAGATGTACCTCTCTGCTGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAGAAGGTTGGGAAGTTGAAAGATTGGAGCTGGATTAGCATCAAAGAACAAGTTTATTCATTTAAACCCAATGACAAATCACATTGTCAAAGTGCAGAAATGTACAATCTGTTGGAGACTGTACTTGATGAGGTAAAAACTCTTGGTTACGAGCCTGTTGAACATATGGAGGTAATCGAAGACGAGGAAGAGGTATTTTCCTCTACTATTCATCATAGCGAACAGTTAGCCGTTGCTTTTGGTTTGTTAAACCTACCAACTTCCACCCCGATTCGGATTGTCAAGAGCATCACCATGTGTAGAGATTGCCACAATTTTATCGGATTCATTTCTTTATTGAAAGGAAGGGAAATCGTCATCCGAGATAGTAAGCAACTTCATAAGTTTTTGAACGGATACTGTTCTTGTGGAGGTTTCGGAGATTTTCTTTAG 2280 40.18 MASFPSVTLTAALKLEPHSRKRHATTFPLNDKSFPHQKNHSLIQLNVDAEPKFVDLREALSLLNDGTRIETSYYIPLLQECLDRNLAAEAEIIHGHIVKAGTHEDLFVMTFLVNVYAKCGVMENARKVFDNLPRRNVIAWTTLVTGYVQNSQPLVAFRVFIEMLEAGAYPTNYTLGIVLNACSSLQSIEFGKQVHAYIIKYHIDFDTSIGNSLSSFYSKFGSLELAIRAFQKIKEKNVISWTSVVSSCCDNGQAARSLSFFTEMLLDGVEPNEYTLTSVLSACCVMLTLGLGAQIHSLSIKLGYGSSIPIKNSVMYLYLKCGWLTEAQKLFEGMETLNLITWNAMIAGHAKMMDLAADDLAAHKSGSTALTIFQKLHRSGTKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKATKAFLEMPSRTLISWTSMITGFARHGLSQQALQLFEDMRLAGIRPNQVTFVGVLSACSHAGLVDEALYYFEVMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVKKMNFEPSEIIWSMLIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLKMYLSAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEQVYSFKPNDKSHCQSAEMYNLLETVLDEVKTLGYEPVEHMEVIEDEEEVFSSTIHHSEQLAVAFGLLNLPTSTPIRIVKSITMCRDCHNFIGFISLLKGREIVIRDSKQLHKFLNGYCSCGGFGDFL 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19003410 19006723 + Lsi08G010420.1 Lsi08g01042 668968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01042 759 Gene3D Tetratricopeptide repeat domain 288 357 IPR011990 GO:0005515
Lsi08g01042 759 Gene3D Tetratricopeptide repeat domain 358 513 IPR011990 GO:0005515
Lsi08g01042 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat 312 337 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat 424 449 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat 527 548 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat family 236 284 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat family 452 497 IPR002885 -
Lsi08g01042 759 Pfam PPR repeat family 135 183 IPR002885 -
Lsi08g01042 759 Pfam E motif 567 628 IPR046848 -
Lsi08g01042 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Lsi08g01042 759 Gene3D Tetratricopeptide repeat domain 191 287 IPR011990 GO:0005515
Lsi08g01042 759 PANTHER OS01G0913400 PROTEIN-RELATED 69 680 - -
Lsi08g01042 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Lsi08g01042 759 Gene3D Tetratricopeptide repeat domain 43 190 IPR011990 GO:0005515
Lsi08g01042 759 Gene3D Tetratricopeptide repeat domain 514 710 IPR011990 GO:0005515
Lsi08g01042 759 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Lsi08g01042 759 Pfam DYW family of nucleic acid deaminases 677 755 IPR032867 GO:0008270
Lsi08g01042 759 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 69 680 - -
Lsi08g01042 759 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Lsi08g01042 759 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Lsi08g01042 759 TIGRFAM PPR: pentatricopeptide repeat domain 239 273 IPR002885 -
Lsi08g01042 759 TIGRFAM PPR: pentatricopeptide repeat domain 525 548 IPR002885 -
Lsi08g01042 759 TIGRFAM PPR: pentatricopeptide repeat domain 139 171 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01042 - - - csv:101207363 1281.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01042 Lsi-Chr8:19003410 Lsi05g01250 Lsi-Chr5:20296971 4.25E-65 dispersed
Lsi08g01042 Lsi-Chr8:19003410 Lsi05g00088 Lsi-Chr5:1603644 3.27E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01042 Lsi_Chr08 FPKM 1.636419 1.359699 7.472971 7.197912 26.776302 30.473297 27.893305 7.871541 6.166671 6.752956