Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01043 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTTTTGCTATGAAAGTCCTCGATCGGAGCACGATAATCAAGCACAAGATGGTCGACCAGGTTCTTGCAAGCCGTACTAAGATTTACATAATCCTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATCATGGACGGCTAAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTGAAGCCTGAGAATCTCCTACTCGACTCCCTAGGTAATTTAAGGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTGAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGATGTTTGGTCCTGTGGGATTGAGAGAGCTGACTTTTCATGTCCATCTTGGTTCCCAGTGGGGGCAAAAGCTTTAATCCACAGAATATTTGACCCTAATCCTTCAACTGTAAAGGATGAGTGGTTCAAGAAAAATTATGTTTCTGCCAACCTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAAAGGACCGAAGAACAACGTGGTAACGAGGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGTTTAAACCTGAGAACGATGTTTGACCGTGGCCAGGATTCTATGAAATACCCGACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTTTTATTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACACACATTCGCAATTACAAGGACTTTGATCCGAATCATTTTTCCCGTAGATTTTTGAAGTTGCTCCCACGTTCTTTATGGTGGACATTCAGAAAGCAGCAGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATGGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCAGCAAATCAAGGATCACCAAGAACAAGAGTAAAAAACGTTGATGCAACAAAGCCTGAGAAACTTCACAGCGTCATCTAA 1194 43.05 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESFAMKVLDRSTIIKHKMVDQVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLRISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGIERADFSCPSWFPVGAKALIHRIFDPNPSTVKDEWFKKNYVSANLFEDEDVNLDDVNAVFDDPEEQRTEEQRGNEDMSPLALNAFDLIILSQGLNLRTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGYKTHIRNYKDFDPNHFSRRFLKLLPRSLWWTFRKQQGKPASTSSSTRAFMANLKISSGNLQLTPANQGSPRTRVKNVDATKPEKLHSVI 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19006299 19012685 - Lsi08G010430.1 Lsi08g01043 668969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01043 397 ProSiteProfiles NAF domain profile. 251 275 IPR018451 GO:0007165
Lsi08g01043 397 Pfam Protein kinase domain 9 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01043 397 PANTHER - 175 317 - -
Lsi08g01043 397 PANTHER - 2 175 - -
Lsi08g01043 397 SUPERFAMILY Protein kinase-like (PK-like) 6 204 IPR011009 -
Lsi08g01043 397 Pfam NAF domain 253 311 IPR004041 GO:0007165
Lsi08g01043 397 MobiDBLite consensus disorder prediction 368 397 - -
Lsi08g01043 397 MobiDBLite consensus disorder prediction 368 382 - -
Lsi08g01043 397 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 175 317 - -
Lsi08g01043 397 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 175 - -
Lsi08g01043 397 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Lsi08g01043 397 Gene3D Transferase(Phosphotransferase) domain 1 3 257 - -
Lsi08g01043 397 SMART serkin_6 9 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01043 397 Gene3D Kinase associated domain 1, KA1 258 322 - -
Lsi08g01043 397 ProSiteProfiles Protein kinase domain profile. 9 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01043 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01043 Lsi-Chr8:19006299 Lsi02g00916 Lsi-Chr2:8801729 1.02E-110 dispersed
Lsi08g01043 Lsi-Chr8:19006299 Lsi01g00124 Lsi-Chr1:1284522 1.83E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83848 PF00069 Pkinase 7.80E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01043 - - csv:101222107 574.704