Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01047 ATGGAGCTCGACGAACACGTATTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAACTGGGAAGCCATTCCAAACGAAGTCACCGATCTCTGCTCGAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTGTAAATTTCCCCCCAAATTCTTCCTCAGAACCTCTATCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATGCCGCCATGGAAGTAGCAGCAGCAGCCGCCGCCGCGCCTCTGCCATTTCAACCAGAGCATGCGAGTGTAGAGCGAGAAGAAGAAGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCAGCTTGTAAAATGGAGCCGAATCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTACAAGGCCAACCGTCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTAGCAGATGCGATTGAATACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTGGAAGGATCAAATTCGAGGACAAATTCACTGAAGAACACAAAACCGAGTGAATTCGTATTTGAAGTGGAAAGCAGAAATGGGGACACGAGAATCGAGATTTGCTGTGCAGGAAAACCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGAGGAAACTGCTTGTAG 999 45.25 MELDEHVFLEELMALRRDANWEAIPNEVTDLCSNAWAFDYCFDQSTVNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYAAMEVAAAAAAAPLPFQPEHASVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNSRTNSLKNTKPSEFVFEVESRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGNCL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19041201 19043905 + Lsi08G010470.1 Lsi08g01047 668973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01047 332 SMART finulus 174 223 IPR011598 GO:0046983
Lsi08g01047 332 Gene3D - 176 250 IPR036638 GO:0046983
Lsi08g01047 332 PANTHER DNA BINDING PROTEIN 3 332 - -
Lsi08g01047 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lsi08g01047 332 Coils Coil 207 234 - -
Lsi08g01047 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 332 - -
Lsi08g01047 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 233 IPR036638 GO:0046983
Lsi08g01047 332 CDD ACT_UUR-ACR-like 257 298 - -
Lsi08g01047 332 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Lsi08g01047 332 Coils Coil 109 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02300 Lsi08g01047 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01047 Lsi-Chr8:19041201 Lsi11g01209 Lsi-Chr11:20620419 5.65E-16 dispersed
Lsi05g00449 Lsi-Chr5:5739400 Lsi08g01047 Lsi-Chr8:19041201 6.86E-37 transposed
Lsi01g00831 Lsi-Chr1:6593034 Lsi08g01047 Lsi-Chr8:19041201 6.35E-72 wgd
Lsi04g02300 Lsi-Chr4:30168884 Lsi08g01047 Lsi-Chr8:19041201 1.48E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25787 PF00010 HLH 6.10E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01047 - - csv:101221329 550.436