Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01048 ATGTCTCCACCACTACTTGATGTTGGGGAGGTGGAGGAAAGTCGCAGCAATGTCACTCTGTTGGCTTCCTCAAACTCGATGGAGAGTGTCAGCCCAAACAATTTGGGATTTGAAGAGCGTAATTACATGGGATTATCTGATTCTTCTTCAGAGGACAGCTGTATGACTGCCACAAAGTCTGATGGAAACAAACCCTCGCTGAATCTTAAGGCTACAGAATTGAGGCTAGGTCTCCCTGGATCTGAATCCCCCGAGAGAGATCCAGATATCAGTTTGCGTAGCTCTTCTCAACTTGATGAAAAACCACTATTTCCTTTGCACCCATCAAGTGATGGTCACTACTCTTCCCCACATAAGACTGTCGTCTCAGGCAACAAAAGGGGGTTTTCAGATGCTATGAACGAATTCTCAGAGGAAAAATATCACGCTAACATTAGTTTGAAAGCCGGTTCTTTGCTAGAGAACCTTGGAAGTCAAATGGGGAAAGTGAAAGAGGCAACTACACAAAAAGCTGTACAAGAGAGGCCTCAAGAAAATAGTGAAACTAGGCCATCTCATAACGATACTGCAAATAACAACACCAGCGCACCTGTTTCCAAGGCACAGGTTGTGGGTTGGCCGCCCATAAGATCTTTCAGGAAGAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGATGGAAAAGCAATGCCTGGTGCACTCTTTATCAAAGTCAGCATGGATGGTGCTCCTTATCTTAGGAAGGTAGATCTGAGGAACTACTCTGCATACCAGGACCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACTATAGGTCAATATGGAGCTCATGGAGCTCTGGGCATGGAGAAAATGAGTGAGAGCAAGCTGAAAGATCTTCTTCATGGCTCAGAATATGTTCTAACATATGAGGATAAGGATGGTGATTGGATGCTCGTTGGTGATGTCCCATGGGAGATGTTCACTGACTCCTGTAAGAGGCTGAGGATTATGAAGAGCTCGGATGCAATTGGACTGGCTCCTAGGGCGGTGGAGAAGTGCCGGAACAGGAACTAG 1068 45.41 MSPPLLDVGEVEESRSNVTLLASSNSMESVSPNNLGFEERNYMGLSDSSSEDSCMTATKSDGNKPSLNLKATELRLGLPGSESPERDPDISLRSSSQLDEKPLFPLHPSSDGHYSSPHKTVVSGNKRGFSDAMNEFSEEKYHANISLKAGSLLENLGSQMGKVKEATTQKAVQERPQENSETRPSHNDTANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAMPGALFIKVSMDGAPYLRKVDLRNYSAYQDLSSALEKMFSCFTIGQYGAHGALGMEKMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSDAIGLAPRAVEKCRNRN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19070604 19076128 + Lsi08G010480.1 Lsi08g01048 668974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01048 355 SUPERFAMILY CAD & PB1 domains 231 336 - -
Lsi08g01048 355 MobiDBLite consensus disorder prediction 183 200 - -
Lsi08g01048 355 MobiDBLite consensus disorder prediction 161 200 - -
Lsi08g01048 355 MobiDBLite consensus disorder prediction 22 126 - -
Lsi08g01048 355 MobiDBLite consensus disorder prediction 168 182 - -
Lsi08g01048 355 Pfam AUX/IAA family 72 346 IPR033389 -
Lsi08g01048 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 141 IPR003311 GO:0005634|GO:0006355
Lsi08g01048 355 MobiDBLite consensus disorder prediction 80 94 - -
Lsi08g01048 355 ProSiteProfiles PB1 domain profile. 235 337 IPR000270 GO:0005515
Lsi08g01048 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 160 346 IPR003311 GO:0005634|GO:0006355
Lsi08g01048 355 MobiDBLite consensus disorder prediction 43 67 - -
Lsi08g01048 355 MobiDBLite consensus disorder prediction 22 36 - -
Lsi08g01048 355 Gene3D - 230 349 - -
Lsi08g01048 355 PANTHER AUXIN-RESPONSIVE PROTEIN 160 346 - -
Lsi08g01048 355 PANTHER AUXIN-RESPONSIVE PROTEIN 16 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01048 K14484 IAA; auxin-responsive protein IAA - csv:101221088 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02812 Lsi-Chr2:34310639 Lsi08g01048 Lsi-Chr8:19070604 9.74E-91 dispersed
Lsi05g01052 Lsi-Chr5:18042116 Lsi08g01048 Lsi-Chr8:19070604 5.99E-28 dispersed
Lsi05g01777 Lsi-Chr5:25073377 Lsi08g01048 Lsi-Chr8:19070604 9.95E-32 dispersed
Lsi06g00791 Lsi-Chr6:16507025 Lsi08g01048 Lsi-Chr8:19070604 2.77E-57 dispersed
Lsi06g00846 Lsi-Chr6:17819143 Lsi08g01048 Lsi-Chr8:19070604 1.60E-40 dispersed
Lsi06g00847 Lsi-Chr6:17822100 Lsi08g01048 Lsi-Chr8:19070604 1.02E-50 dispersed
Lsi08g01048 Lsi-Chr8:19070604 Lsi11g00445 Lsi-Chr11:4628605 2.37E-70 dispersed
Lsi09g01192 Lsi-Chr9:19160403 Lsi08g01048 Lsi-Chr8:19070604 2.06E-37 dispersed
Lsi09g01278 Lsi-Chr9:20595585 Lsi08g01048 Lsi-Chr8:19070604 6.53E-35 dispersed
Lsi07g00527 Lsi-Chr7:5608566 Lsi08g01048 Lsi-Chr8:19070604 6.96E-23 transposed
Lsi01g00834 Lsi-Chr1:6620707 Lsi08g01048 Lsi-Chr8:19070604 6.56E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25788 PF02309 AUX_IAA 5.60E-92 CL0072 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01048 Lsi_Chr08 FPKM 3.624577 3.780971 4.51652 4.578117 4.688692 4.264678 5.802327 5.59797 5.34144 5.579072