Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01049 ATGGGTACTGGTTGGAGAAAAGCGTTTTGTACAACCATTTCTCGAGATTCAGAGTCTAATAATGTCTCTGAGAAACAGAGGAGCTCTGCTACTCCTAATCCCAGCCCTAGAAGCTGTGTTCGATTGGGTTTCTTCAGCAATCCTTCTACTCCGCGGTTGCAGTCTCATCAGCCATTGAGTAGTCCAGGTCTTCGTTGCCGTACAGCCCAAGATGCCACTGTTAATCAGAGTCCGACTCTCCATTGCAAGACCTCCTCCTCTTCCTCTACTCCTAAATCTGCGAAATCTCAACGGGGGGTTTTGGGTTCGAATCCTTCCTCTCCTCGCTCCCCTTTGAAGCTCTCTCTTTTCAAGAACAGCTTTAAGTTCAGAAGTAGCTGTGGAATCTGTTTGAGTAGCGTGAAGACAGGGCATGGGACGGCGATTTACACGGCGGAGTGTTCTCATGCTTTTCATTTTCCTTGTATAGCCGCTCATGTCAGAAACCACGCCACTCTGGTTTGCCCTGTCTGCAACACCACATGGAAAGACGTTCCTCTGCTCGCCGCCCATAAGAATTTGGGCCCACTAAACCAACACGATTCCAAACCCAAGATTGAAGATAAAACCATGATTAAATCTTCTCCCAGAGCCTTTAAATCCAAACAAGACCCAAAAGAAAAGCCCTCGGAATTCAGGTCCTACGATGACGATGAACCCCTGTTGTCCCCAACCTCCGGCGGCCGGATTATCCCAATCCCCGAAGCCGATGAGAACCAAGACGATGTCGAGGAATTTCAAGGCTTCTTTGTAGACCCAAAGCCGCCTTCGAGTTCGGTTAAATCTTCAATTCAGAGGACCAATGTGCAGGTCCGTCTCCTCCCTGAAACGGCGTTGATTTCATCTGGACACACCCACGAGACCTACGCGGTGGCTCTGAAAGTTAAAGCGCCCCCGCCGCTTCCGGCTAGAAACAGAGCCAATGCCAATTTACTAGACCCATCCCGCCGTGCGCCGATTGATTTAGTGACAGTGCTGGATGTAAGCGGAAGCATGACGGGGCCGAAATTAATGATGCTGAAACGCGCCATGCGATTGGTCATTTCGTCGTTAGGCTCGTCGGACCGGCTCGCCATCGTCGCTTTCTCGGCTACTCCTAAAAGGGTGTTGCCGTTGAGGAGAATGACGGCTCAAGGCCAACGCGCCGCCCGGCACGTGATTGACACGCTGGTCTGCAGCCAAGGAACCAGCGTGGGGGAGGCTTTGAGAAAAGCCACAAAAGTACTCGAGGACCGGCGAGAGAGAAACCCAGTCGCTAGTATCATGCTTTTATCCGACGGTCAAGATGAGCGGATCCATTCAAATCAACGGCAAATGACACGACACGAGTCATCCACACGGTTCGCCCACATAGAAATCCCGGTTCACGCGTTTGGGTTCGGGAAAAGCGGCGGATACTGTCAAGAACCGGCGGAGGACGCCTTTGCAAAATGCGTGAGTGGGTTATTAAGCGTTGTGGTTCAAGACCTTCGTATTCAACTCGGGTTCCCGACCGGTTCATCTCCGGTTGTGATCTCGGCCATATATTCATGTACAGGCCGGCCCACGGTTTGCAGCTTGGGTTCGGTCCGGCTTGGCGATTTATACGCCGAGGAGGAAAGGGAATTACTCGTGGAGTTAAAGATTCCAACCTCGGCTGCTGGGGCCCACCACGTGATGACGATGCAGTGCCTTTACAAAGACCCATCCACACAAGAAGTAGTGTACAGCCGAGAACAAGACATCCTCATCGCACGACCAGTAGCCGTTGGATCATCCGCTCCGAAGATCGAACGGCTGAGAAACATGTTCATAACGACTCGTGCTGTGGCGGAATCCAGGAGATTAATTGAGTACGACGATCATACAAGCGCACATCATTTACTCGCGTCGGCGCGTGCATTACTAATCCAATCCGGATCAGCAAGTGCTGACGTGTACGTGCGTGAGCTGGAAGTTGAGCTGGCAGAACTCCATTGGCGAAGGCAACAACAATTCGAATTACATCAGCAGCAGCAACAGCAACAGCATTTAGTCACAACAACGCCACGTAGGCGAGGTGGCGGTGGCGATAAGGAAAATCCGGCAATGGTGGACGAAAACGGAGAGCCGTTAACACCGACATCGGCATGGAGGGCGGCAGAGAAGCTTGCGAGAGTGGCGATTATGAAAAAATCGTTGACGAGTAGAGTGGGAGATTTACACGGGTTTGAAAACGCCAGGTTCTAG 2247 51.71 MGTGWRKAFCTTISRDSESNNVSEKQRSSATPNPSPRSCVRLGFFSNPSTPRLQSHQPLSSPGLRCRTAQDATVNQSPTLHCKTSSSSSTPKSAKSQRGVLGSNPSSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGHGTAIYTAECSHAFHFPCIAAHVRNHATLVCPVCNTTWKDVPLLAAHKNLGPLNQHDSKPKIEDKTMIKSSPRAFKSKQDPKEKPSEFRSYDDDEPLLSPTSGGRIIPIPEADENQDDVEEFQGFFVDPKPPSSSVKSSIQRTNVQVRLLPETALISSGHTHETYAVALKVKAPPPLPARNRANANLLDPSRRAPIDLVTVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAIVAFSATPKRVLPLRRMTAQGQRAARHVIDTLVCSQGTSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERIHSNQRQMTRHESSTRFAHIEIPVHAFGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFPTGSSPVVISAIYSCTGRPTVCSLGSVRLGDLYAEEERELLVELKIPTSAAGAHHVMTMQCLYKDPSTQEVVYSREQDILIARPVAVGSSAPKIERLRNMFITTRAVAESRRLIEYDDHTSAHHLLASARALLIQSGSASADVYVRELEVELAELHWRRQQQFELHQQQQQQQHLVTTTPRRRGGGGDKENPAMVDENGEPLTPTSAWRAAEKLARVAIMKKSLTSRVGDLHGFENARF 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19098073 19101087 + Lsi08G010490.1 Lsi08g01049 668975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01049 748 ProSiteProfiles VWFA domain profile. 334 474 IPR002035 -
Lsi08g01049 748 SUPERFAMILY vWA-like 332 487 IPR036465 -
Lsi08g01049 748 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Lsi08g01049 748 SMART ring_2 127 171 IPR001841 -
Lsi08g01049 748 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 748 - -
Lsi08g01049 748 CDD vWA_C3HC4_type 333 500 - -
Lsi08g01049 748 MobiDBLite consensus disorder prediction 12 109 - -
Lsi08g01049 748 Pfam von Willebrand factor type A domain 335 441 IPR002035 -
Lsi08g01049 748 Gene3D von Willebrand factor, type A domain 334 494 IPR036465 -
Lsi08g01049 748 Pfam RING-like zinc finger 127 156 IPR001841 -
Lsi08g01049 748 SUPERFAMILY RING/U-box 126 177 - -
Lsi08g01049 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 181 IPR013083 -
Lsi08g01049 748 MobiDBLite consensus disorder prediction 187 247 - -
Lsi08g01049 748 MobiDBLite consensus disorder prediction 675 712 - -
Lsi08g01049 748 CDD RING-H2 127 172 - -
Lsi08g01049 748 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 748 - -
Lsi08g01049 748 MobiDBLite consensus disorder prediction 194 231 - -
Lsi08g01049 748 SMART VWA_4 332 511 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01049 - - - csv:101220853 1323.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00518 Lsi-Chr1:4232609 Lsi08g01049 Lsi-Chr8:19098073 6.52E-40 dispersed
Lsi03g00032 Lsi-Chr3:638765 Lsi08g01049 Lsi-Chr8:19098073 9.43E-82 dispersed
Lsi08g01049 Lsi-Chr8:19098073 Lsi03g01645 Lsi-Chr3:27631109 7.39E-06 dispersed
Lsi08g01049 Lsi-Chr8:19098073 Lsi10g01256 Lsi-Chr10:16795701 3.08E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01049 Lsi_Chr08 FPKM 10.859438 14.965807 12.594026 14.400505 22.865955 16.495684 19.573311 17.397291 18.830856 18.646978