Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01050 ATGGCTGTTTCAACCAGTTTTTCCGGTGCCAAATTGGAAGCCCTTTTGTTGAAATCGGCCGCAACCTCTTCCTCCACCAGGGTTTCGTCTTCTTCTCACCTTCCCGGTTTCTGCAAATCCATTCGAACCAGGAGAATTCTATTTCAGAGAAGTGGGGTTTCGTTTTTAACTCCAGTGAGGTCCGAGGTTGCTTCTTCTGATGTTTTGGTTCAGAATGATGAATTTGATCGAGTTAAATCTTCCAATCTCTCTGCCCTTGAACAGCTCAAGACCTCTGCTGTTGACAGATATACAAAGGAAAGAAGCAGCATTGTTGTGATTGGGCTTAGTATTCATACAACACCTGTTGAAATGAGAGAAAAACTAGCCATTCCTGAGGCAGAATGGCCTCGCGCCATTGGAGAGCTCTGTGGCTTAAACCACATTGAAGAAGCAGCTGTTCTTAGCACCTGCAACAGAATGGAGATATATGTTGTTGCTCTATCTCAGCATCGTGGAGTGAAAGAAGTGACTGAATGGATGTCGAAGACAAGTGGAATCCCGGTTTCAGAGATTTGCCAACACCGGTTTTTGCTGTATAACAATGATGCCACGCAACATATTTTCGAAGTTTCAGCAGGGCTTGACTCTCTTGTTCTAGGAGAAGGCCAAATCCTTGCTCAGGTTAAACAAGTTGTCAAGGTTGGGCAGGGTGTTGCAGGATTTGGAAGGAACATTAGTGGGCTTTTCAAGCACGCCATCACGGTGGGTAAGCGTGTAAGGACGGAGACTAATATTGCTGCTGGAGCTGTCTCTGTAAGTTCTGCTGCTGTAGAATTGGCCTTGATGAAGCTTCCTGAAGCTTCACATGCCACTGCCAGAATGCTGGTGATTGGAGCTGGTAAGATGGGAAAGCTTGTTATTAAACATTTGGTAGCTAAAGGCTGCACAAAGATGGTTGTTGTGAATCGATCTGAAGAGAGAGTCACAGCCATCCGCGAGGAGATCAAGGATGTCGAGATAATCTACAAGCCCCTCACTGAAATGCTTAGCTGCACAGCTGAAGCGGACGTGATATTTACCAGCACAGCTTCTGAAAGCCTTTTGTTTACAAAGGAGCAGGTTAAGGATCTCCCCCCTGTTGGGCATGATGTTGGGGGCTTAAGGCTTTTCATCGATATCTCTGTTCCTCGAAATGTCGGAGCGTGCATCAATGATCTAGAAGATGTACGAGTGTACAATGTTGACGACCTTAAAGAGGTAGTTGCTGCAAACAAGGAGGATAGGCTCCGAAAAGCGATGGAAGCACAATCAATTATCACTGAAGAATCCAAGCAATTTGAAGCATGGAGGGATTCGTTGGAGACTGTTCCAACGATCAAGAAACTGAGGGCTTATGCTGAAAGAATCAGAACTGCTGAATTAGAAAAATGCCTATCAAAGATGGGCGATGAAATCCCAAAGAAAACTCGACGAGCTGTAGACGATCTTAGTCGTGGTATAGTTAACAAGCTGCTTCATGGTCCTATGCAGCATTTGAGATGCGACGGGAGCGACAGCCGAACTTTAAGCGAAACCTTGGAGAACATGCACGCTCTAAATAGAATGTTCAGCCTCGAGACAGAGATAGCAGTGTTGGAACAGAAAATCAGAGCTAAAGTGGAACAAAACCAGAAGTAA 1659 45.27 MAVSTSFSGAKLEALLLKSAATSSSTRVSSSSHLPGFCKSIRTRRILFQRSGVSFLTPVRSEVASSDVLVQNDEFDRVKSSNLSALEQLKTSAVDRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEIKDVEIIYKPLTEMLSCTAEADVIFTSTASESLLFTKEQVKDLPPVGHDVGGLRLFIDISVPRNVGACINDLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDEIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19105248 19108289 - Lsi08G010500.1 Lsi08g01050 668976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01050 552 TIGRFAM hemA: glutamyl-tRNA reductase 104 512 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 Hamap Glutamyl-tRNA reductase [hemA]. 103 530 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 Pfam Shikimate / quinate 5-dehydrogenase 272 414 IPR006151 -
Lsi08g01050 552 Coils Coil 315 335 - -
Lsi08g01050 552 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 428 532 IPR015896 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 Gene3D - 263 415 - -
Lsi08g01050 552 Coils Coil 529 549 - -
Lsi08g01050 552 CDD NAD_bind_Glutamyl_tRNA_reduct 104 426 - -
Lsi08g01050 552 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 262 422 IPR036291 -
Lsi08g01050 552 Gene3D - 102 262 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 107 257 IPR015895 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 PANTHER GLUTAMYL-TRNA REDUCTASE 1 552 - -
Lsi08g01050 552 ProSitePatterns Glutamyl-tRNA reductase signature. 200 223 IPR018214 GO:0008883
Lsi08g01050 552 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 103 259 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 426 512 IPR036453 GO:0008883|GO:0033014|GO:0050661
Lsi08g01050 552 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01050 K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] - csv:101220615 985.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00657 Lsi-Chr3:8315621 Lsi08g01050 Lsi-Chr8:19105248 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01050 Lsi_Chr08 FPKM 68.716034 71.598824 54.099331 54.122669 54.851055 57.132938 52.299629 117.410858 114.245491 115.328056