Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01051 ATGTGTAACCCAAAACCATCCTCTCCTAATAATTCCTCATTTCTTCCTTCTAACTACAAAACCAACTTCATGACCACTCCCAACAAGAACTTGGACAATAATAATCATAATATTCATCATAATAACAATCTTCTCAAACCTTCTGATGATCAACTGGCTCAACTTCATAGATTCCCAACTCTTTCTGAGGCTGTGGAAGAAATGAAGGAAATAGGGAAGATTTCAGGTCCAACAGCAATAACAGGGCTGCTTTTGTACTCAAGAGCTATGATCTCCATGCTTTTTCTTGGCTACCTTGGAGAACTTGAACTTGCAGGAGGTTCTCTCTCTATTGGATTTGCTAACATCACTGGATACTCTGTTCTTTCTGGATTAGCCATGGGAATGGAACCCATTTGTGGCCAAGCTTATGGAGCTAAACAATGGAAACTCCTTGGTATTACCCTTCAAAGAACTGTCCTTCTTCTTCTTACTTCCTCTGTTCCCATTTCTTTCATGTGGCTCAACATGAAACGAATCCTCTTATGGTGTGGCCAAGATGAAGAAATCTCTACTGTGGCTCAAACCTTCATTCTCTTCTCAATTCCTGACCTCATTTTCCTTTCCCTTCTTCACCCACTTCGAATTTACTTAAGAACTCAAAGCATTACTCTCCCATTGACTTATTGCTCTGCTCTCTCTGTTTTGCTTCATGTTCCCCTGAATTTCCTCCTGGTTGTGCATTTCAAAATGGGGATTTCTGGTGTTGCCATTGCCATGGTTTGGTTCAATTTGAATGTCTTCTTGTTCCTTGTCTCTTTTGTTTACTTCTCTGGAGTTTACAAAGATTCTTGGGTTTCTCCAAGTGTGGATTGCCTCCATGGATGGACTCCTCTGCTTTCTCTTGCAATTCCCACTTGTGTCTCTGTTTGCCTTGAATGGTGGTGGTATGAATTTATGATAATGCTCTGTGGACTTCTTGTTAATCCCAAAGCTACAATTGCTTCAATGGGGATTTTGATTCAAACCACTTCTTTAGTCTATGTTTTCCCTTCCTCTCTAAGCCTTGGTGTCTCCACCAGAGTTGGAAATGAATTAGGGGCAAATCGACCAGCAAAAGCACGCACTTCCATGATCGTCTCGCTCATTTGCGCTGCGGCGCTCGGCGTGGGGGCCATGGTATTCACCACTCTAATGAGACACAAATGGGGCAGATTTTTCACCAACGACGCCGAGATTTTGGAACTCACAGCAGTGGCATTGCCGATTGTGGGGCTTTGCGAGCTCGGAAACTGCCCACAAACCACCGGCTGCGGCGTTTTGAGAGGAAGTGCTCGGCCGACGACCGGAGCAAATATAAATTTGGGATCATTCTATTTGGTGGGATTTCCTGTGGCGATTTTGATGGGGTTTGTAGTGAAATTGGGATTTGCAGGGCTGTGGATTGGGTTACTTGCGGCTCAAGGTACATGTGCTTTGATGATGATTTATGTACTTTGCACAACAGATTGGATGGTTCAAGTTGAAAGAGCGATGCAACTAACAATGGCTTCTTCTAATTGCAATCCGCCATTGTTGCCAATTTCAGTTTCTTCTTCTTCTTCTTCTTCTTCATGTTCAGAAGATGATGAAGAAGATGATAATGGTAAAGATGGAAGTCAGAGTATGAAAAAGATTGAAAAATTGGAGCAGATTTTGTGCAGTAATTATGAAACTGACCCTCTCATACCCACACCTACAAAACAAACTACTGTTCATTAA 1740 42.41 MCNPKPSSPNNSSFLPSNYKTNFMTTPNKNLDNNNHNIHHNNNLLKPSDDQLAQLHRFPTLSEAVEEMKEIGKISGPTAITGLLLYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLTSSVPISFMWLNMKRILLWCGQDEEISTVAQTFILFSIPDLIFLSLLHPLRIYLRTQSITLPLTYCSALSVLLHVPLNFLLVVHFKMGISGVAIAMVWFNLNVFLFLVSFVYFSGVYKDSWVSPSVDCLHGWTPLLSLAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARTSMIVSLICAAALGVGAMVFTTLMRHKWGRFFTNDAEILELTAVALPIVGLCELGNCPQTTGCGVLRGSARPTTGANINLGSFYLVGFPVAILMGFVVKLGFAGLWIGLLAAQGTCALMMIYVLCTTDWMVQVERAMQLTMASSNCNPPLLPISVSSSSSSSSCSEDDEEDDNGKDGSQSMKKIEKLEQILCSNYETDPLIPTPTKQTTVH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19131850 19134151 - Lsi08G010510.1 Lsi08g01051 668977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01051 579 PANTHER PROTEIN DETOXIFICATION 45 521 - -
Lsi08g01051 579 PANTHER MULTIDRUG RESISTANCE PROTEIN 45 521 - -
Lsi08g01051 579 MobiDBLite consensus disorder prediction 525 549 - -
Lsi08g01051 579 CDD MATE_eukaryotic 67 503 IPR045069 GO:0042910|GO:1990961
Lsi08g01051 579 Pfam MatE 298 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi08g01051 579 Pfam MatE 77 237 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi08g01051 579 TIGRFAM matE: MATE efflux family protein 83 474 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01051 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207119 1001.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02272 Lsi-Chr3:33639393 Lsi08g01051 Lsi-Chr8:19131850 4.90E-160 dispersed
Lsi08g01051 Lsi-Chr8:19131850 Lsi09g00305 Lsi-Chr9:3118896 0 dispersed
Lsi08g01051 Lsi-Chr8:19131850 Lsi06g00222 Lsi-Chr6:2553189 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g574 . . . . . . . . Cmo05g00594 Cmo12g00181 . . . Car12g00207 Sed01g1237 . . Bhi04g00898 Tan02g2514 Cmetu03g1714 . Hepe10g0400 . Lcy13g1451 Cla08g01188 Cam08g1653 Cec08g1229 Cco08g1348 Clacu08g1349 . Cre08g1135 . . Cone17ag1153 Cone20ag0575 . . . Cme03g01775 Blo17g00082 Blo18g00092 . Bda13g01343 Bpe02g01171 Bpe14g00502 Bma01g01360 Bma02g00097 . . . Cma12g00226 Cma05g00568 Car05g00512 . Cpe11g00497 . . . . . . . . . . . . . . . Lsi08g01051 Csa02g02235 Chy03g01282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006622 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01051 Lsi_Chr08 FPKM 19.15296 20.155222 20.143349 20.791059 23.491352 24.033287 24.240597 23.2749 21.518084 22.019032