Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01052 ATGGTGATGCCCGAGTCGTCTGAGGGCCACCGGACGGCGTATCGTCGAGCGAATCGACCGCCGACTCGACCGCTAGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAGCCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTGGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGGTTGGTTTTTGGATTCTTGACGTCGCTAACAACGTCTCCCAGGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCAACTGGATCTTTTAGTGGCTGTTACAAGCTCTTCCCGTTTACTCGTACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGCATATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGTCAGGTCGTCCCTGGTCTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAACATTTCTCTGGGACTTGCTACGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATGGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGCGGCAAGCCAAATGAAGGACAGACTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTTGGAATAACTTCGTTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTATATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTTCTTTCTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATTGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTCGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTAGCAAGTGGACTCATTGCCATCTTGGCTCTTTCTCGGTCTAGTGCTCAGAACCCCAGAAACCTCACATGA 1524 47.24 MVMPESSEGHRTAYRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGCYKLFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSISAAQELPLVSSVRSSLVLEEGMGQSSHASETFLWDLLRTFRHFSGYIWVILLVTSLTWMAWFPFILFDTDWMGREIYGGKPNEGQTYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMALCFLSILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAALASGLIAILALSRSSAQNPRNLT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19137124 19144520 - Lsi08G010520.1 Lsi08g01052 668978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01052 507 Pfam MFS/sugar transport protein 48 445 - -
Lsi08g01052 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 498 IPR005989 GO:0005887|GO:0008515|GO:0015770
Lsi08g01052 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 15 505 - -
Lsi08g01052 507 CDD MFS_SLC45_SUC 35 474 - -
Lsi08g01052 507 SUPERFAMILY MFS general substrate transporter 33 496 IPR036259 -
Lsi08g01052 507 MobiDBLite consensus disorder prediction 1 22 - -
Lsi08g01052 507 PANTHER SUGAR TRANSPORTER 15 505 - -
Lsi08g01052 507 Gene3D MFS general substrate transporter like domains 32 494 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01052 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 903.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01764 Lsi-Chr2:23384820 Lsi08g01052 Lsi-Chr8:19137124 4.48E-133 dispersed
Lsi08g01052 Lsi-Chr8:19137124 Lsi11g00980 Lsi-Chr11:16048908 4.96E-159 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00979 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.4 8.3e-177 617.1
Lsi11g00980 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.0 2.4e-176 615.5
Lsi08g01052 . 32 495 Sucrose Transporter Gene Family AT1G22710 51.1 6.4e-137 484.6
Lsi11g00980 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.0 7.0e-173 604.0
Lsi11g00979 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 2.7e-172 602.1
Lsi08g01052 . 25 495 Sucrose Transporter Gene Family AT2G14670 50.6 9.2e-133 470.7
Lsi11g00980 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 8.8e-146 513.8
Lsi11g00979 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-144 510.0
Lsi02g01764 . 152 638 Sucrose Transporter Gene Family AT2G02860 64.9 2.1e-179 625.5
Lsi11g00980 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 6.5e-163 570.9
Lsi11g00979 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 2.5e-162 568.9
Lsi11g00980 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 1.5e-170 596.3
Lsi11g00979 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.2 5.5e-170 594.3
Lsi08g01052 . 18 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.3e-201 699.5
Lsi11g00979 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.2 2.1e-135 479.6
Lsi11g00980 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.7 1.0e-134 477.2
Lsi11g00979 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.5 7.5e-170 594.0
Lsi11g00980 . 14 495 Sucrose Transporter Gene Family AT1G71880 59.9 1.3e-169 593.2
Lsi08g01052 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 4.8e-132 468.4
Lsi11g00980 . 17 484 Sucrose Transporter Gene Family AT1G71890 59.8 8.6e-166 580.5
Lsi11g00979 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 1.9e-165 579.3
Lsi11g00979 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.5 7.5e-170 594.0
Lsi11g00980 . 14 495 Sucrose Transporter Gene Family AT1G71880 59.9 1.3e-169 593.2
Lsi08g01052 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 4.8e-132 468.4
Lsi11g00979 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.4 8.3e-177 617.1
Lsi11g00980 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.0 2.4e-176 615.5
Lsi08g01052 . 32 495 Sucrose Transporter Gene Family AT1G22710 51.1 6.4e-137 484.6
Lsi02g01764 . 152 638 Sucrose Transporter Gene Family AT2G02860 64.9 2.1e-179 625.5
Lsi08g01052 . 18 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.3e-201 699.5
Lsi11g00979 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.2 2.1e-135 479.6
Lsi11g00980 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.7 1.0e-134 477.2
Lsi11g00980 . 17 484 Sucrose Transporter Gene Family AT1G71890 59.8 8.6e-166 580.5
Lsi11g00979 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 1.9e-165 579.3
Lsi11g00980 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 1.5e-170 596.3
Lsi11g00979 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.2 5.5e-170 594.3
Lsi11g00980 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 8.8e-146 513.8
Lsi11g00979 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-144 510.0
Lsi11g00980 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.0 7.0e-173 604.0
Lsi11g00979 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 2.7e-172 602.1
Lsi08g01052 . 25 495 Sucrose Transporter Gene Family AT2G14670 50.6 9.2e-133 470.7
Lsi11g00980 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 6.5e-163 570.9
Lsi11g00979 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 2.5e-162 568.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01052 Lsi_Chr08 FPKM 7.196389 8.176767 11.957368 12.157311 11.260272 11.252184 11.929645 24.679443 26.569731 24.706591