Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01052 ATGGTGATGCCCGAGTCGTCTGAGGGCCACCGGACGGCGTATCGTCGAGCGAATCGACCGCCGACTCGACCGCTAGTCGGACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAGCCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTGGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGGTTGGTTTTTGGATTCTTGACGTCGCTAACAACGTCTCCCAGGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCAACTGGATCTTTTAGTGGCTGTTACAAGCTCTTCCCGTTTACTCGTACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGCATATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGTCAGGTCGTCCCTGGTCTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAACATTTCTCTGGGACTTGCTACGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATGGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGCGGCAAGCCAAATGAAGGACAGACTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTTGGAATAACTTCGTTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTATATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTTCTTTCTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATTGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTCGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTAGCAAGTGGACTCATTGCCATCTTGGCTCTTTCTCGGTCTAGTGCTCAGAACCCCAGAAACCTCACATGA 1524 47.24 MVMPESSEGHRTAYRRANRPPTRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGCYKLFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSISAAQELPLVSSVRSSLVLEEGMGQSSHASETFLWDLLRTFRHFSGYIWVILLVTSLTWMAWFPFILFDTDWMGREIYGGKPNEGQTYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMALCFLSILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAALASGLIAILALSRSSAQNPRNLT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19137124 19144520 - Lsi08G010520.1 Lsi08g01052 668978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01052 507 Pfam MFS/sugar transport protein 48 445 - -
Lsi08g01052 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 498 IPR005989 GO:0005887|GO:0008515|GO:0015770
Lsi08g01052 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 15 505 - -
Lsi08g01052 507 CDD MFS_SLC45_SUC 35 474 - -
Lsi08g01052 507 SUPERFAMILY MFS general substrate transporter 33 496 IPR036259 -
Lsi08g01052 507 MobiDBLite consensus disorder prediction 1 22 - -
Lsi08g01052 507 PANTHER SUGAR TRANSPORTER 15 505 - -
Lsi08g01052 507 Gene3D MFS general substrate transporter like domains 32 494 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01764 Lsi-Chr2:23384820 Lsi08g01052 Lsi-Chr8:19137124 4.48E-133 dispersed
Lsi08g01052 Lsi-Chr8:19137124 Lsi11g00980 Lsi-Chr11:16048908 4.96E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01052 K15378 - csv:101220384 903.664