Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01054 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCATCTCTTCTTCTCAAGCTCTTACTACTGCTACTACCAACCAATCTCAGTTCTTCTATCTCATGCAAAAGACAGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAACTTCACTGGAATCCAGTGCAATGACCGAGGTCACGTCGTTGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACCTGCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACTGGTTTTTACGGTCATTTTCCTCCAGGAATCACCAACTGCTCTGTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAACTATCCCAGATCTATCGCAAATGAAACAACTGCGTGTACTCGACCTCTCGTACAATTCTTTTACTGGTGATTTTCCCATGTCGGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACAAAGCTGAAATCTATGGTCTTGACAACCTGTATGTTAGATGGCGAAATCCCGCGATCGATAGGGAACATGACGTCTCTTGTTGATCTCGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCATTGCTGAAGAACTTGCAACAACTTGAACTTTATTACAATGAACTCACAGGAAACATACCAGAGGAGATTGGAAATTTAACGGAGCTTGTTGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAACTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCAGAAAATCGCCTGTTGGGGCCATTGCCATTGGATATATGCAGAGGAGGGAAATTGTTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGAAAGTTTTGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATGGGAACAATTCCTGAAGGAGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAATCTCACTGGTTCCCTTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCGGGAGCAGCCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCCGGTCCAGTGCCGTCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGATGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCAATGTTCTCGATCTCTCGAACAATCGTTTATCCGGGAAAATCCCAGAGAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCAAACAATCAACTTTCCGGTGCAATTCCTTTGTCCTTAATCAAACAAGGGTTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTCAAAAAACGTCTAAATTTCATCTGGGGAATCGTCATTCCATTGCTAATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGTCGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAAGAAACCCTTTCTTCGTCATTCTTCCATTTGCAGAACTTCGACCAAAGCAGGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGCCACGGTGGATCAGGAACAGTCTACAAAATCGAGCTCGGAAAAGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGGCATAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATTTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCCCAAGGCCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTTTATTGGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGCATCGCCAAAGTCCTGCAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATTTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTACAGCTTTGGAGTAGTGTTAATGGAGTTGATTACAGGGAAGAAGCCGATTGAAACAGAGTATGGAGAAAACAAGAACATTGTATTCTGGGTTTCGAATAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAAATTAAAAGGGTTGTTCAGGGATGACATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTCGAAGATGTCGAAAAAGGGGAAGATACGTATATGATGTCACTAAAATAA 2829 42.74 MAFHSAFFLLLFFTTFSISSSQALTTATTNQSQFFYLMQKTASGEFLSDWDLSGGKSFCNFTGIQCNDRGHVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTGFYGHFPPGITNCSVIEELNMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEEIGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQNLGKFSPMVVLDLSENRLLGPLPLDICRGGKLLYFLVLQNRLSGEIPESFAECISLLRFRISFNQLMGTIPEGVLGLPHVSIIDVAHNNLTGSLSNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGAIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEETLSSSFFHLQNFDQSRILEAMVEKNIVGHGGSGTVYKIELGKGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEDVEKGEDTYMMSLK 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19156987 19160434 + Lsi08G010540.1 Lsi08g01054 668980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01054 942 Pfam Leucine Rich Repeat 506 527 IPR001611 GO:0005515
Lsi08g01054 942 PRINTS Leucine-rich repeat signature 503 516 - -
Lsi08g01054 942 PRINTS Leucine-rich repeat signature 458 471 - -
Lsi08g01054 942 SMART LRR_sd22_2 311 334 - -
Lsi08g01054 942 SMART LRR_sd22_2 503 526 - -
Lsi08g01054 942 SMART LRR_sd22_2 239 265 - -
Lsi08g01054 942 SMART LRR_sd22_2 455 481 - -
Lsi08g01054 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Lsi08g01054 942 Gene3D Ribonuclease Inhibitor 32 179 IPR032675 -
Lsi08g01054 942 SMART LRR_typ_2 287 311 IPR003591 -
Lsi08g01054 942 SMART LRR_typ_2 239 263 IPR003591 -
Lsi08g01054 942 SMART LRR_typ_2 432 455 IPR003591 -
Lsi08g01054 942 SMART LRR_typ_2 503 527 IPR003591 -
Lsi08g01054 942 SMART LRR_typ_2 94 118 IPR003591 -
Lsi08g01054 942 SMART LRR_typ_2 165 191 IPR003591 -
Lsi08g01054 942 SMART serkin_6 646 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01054 942 SUPERFAMILY RNI-like 71 350 - -
Lsi08g01054 942 Gene3D Ribonuclease Inhibitor 180 283 IPR032675 -
Lsi08g01054 942 Gene3D Transferase(Phosphotransferase) domain 1 724 929 - -
Lsi08g01054 942 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Lsi08g01054 942 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
Lsi08g01054 942 Gene3D Ribonuclease Inhibitor 293 573 IPR032675 -
Lsi08g01054 942 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 1 927 - -
Lsi08g01054 942 ProSiteProfiles Protein kinase domain profile. 646 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01054 942 SUPERFAMILY L domain-like 256 572 - -
Lsi08g01054 942 Pfam Protein kinase domain 648 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01054 942 SUPERFAMILY Protein kinase-like (PK-like) 625 915 IPR011009 -
Lsi08g01054 942 ProSiteProfiles Leucine-rich repeat profile. 505 527 IPR001611 GO:0005515
Lsi08g01054 942 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 927 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01917 Lsi-Chr1:23712412 Lsi08g01054 Lsi-Chr8:19156987 5.33E-12 dispersed
Lsi04g02309 Lsi-Chr4:30282321 Lsi08g01054 Lsi-Chr8:19156987 0 dispersed
Lsi08g00609 Lsi-Chr8:14427553 Lsi08g01054 Lsi-Chr8:19156987 0 dispersed
Lsi08g01054 Lsi-Chr8:19156987 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi03g01283 Lsi-Chr3:23660770 Lsi08g01054 Lsi-Chr8:19156987 5.98E-06 transposed
Lsi06g01157 Lsi-Chr6:21775528 Lsi08g01054 Lsi-Chr8:19156987 1.17E-06 transposed
Lsi09g01767 Lsi-Chr9:26417938 Lsi08g01054 Lsi-Chr8:19156987 2.87E-42 transposed
Lsi01g00847 Lsi-Chr1:6791970 Lsi08g01054 Lsi-Chr8:19156987 0 wgd
Lsi04g02307 Lsi-Chr4:30266100 Lsi08g01054 Lsi-Chr8:19156987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83849 PF00069 Pkinase 8.80E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01054 - - csv:101220145 1727.22