Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01069 ATGTCCAGAATTTCACTGCCTTTTCTCACAACCCTGCTCCCTGTTTACTTCTTCTACTTCATCTCCATACAATTCCATGTAAGTTCACAAGCTGTCAATGTAGACCAGGCCATCTTGCTTGATCTCAAAGAACAATGGGGGAATCCACCCTCTCTCTGGTTATGGAACGCCTCGTCCCCGCCCTGTGATTGGCCTGAGATCATCTGTAGAGACGGCACGGTTACTGGAATCTCTCTGAGGAACAAGAATATCACTGGGAGATTCCCAATTGTCATCTGTAACCTGCAAAATCTCACTGTGCTTGATCTTTCATGGAACTACTTCCCTGGTGAGTTCCCAGAAGTTCTGTACAACTGTTCCAAGCTCAAATATCTTGATCTTTCAGGAAACTATTTTGTGGGTCCAATACCCCAAGACGTAGAGCGGCTTCGAACTCTGCAGTACATGGACCTTAGCGCTAACAACTTCTCGGGCGATTTTCCAGCAGCGCTAGGACGATTGTCAGATTTGAGAACTTTGAACATTTACAGAACTCAATGCAATGGTACATTGCCAGCTGAAATTGGTAATTTGTCCAATCTTGAAACTTTGAGCATGGCGTATAACACTTTGCTTGTCCCATCGCCAATACCACAAGATTTCAAGAAACTGAAGAAGTTGAAGTATATGTGGATGACAAAATCCAATTTGATAGGTGAAATCCCAGAAAGCTTTTCGGATCTTTTGAGCCTTGAGCACTTGGATTTATCGAGTAACAACTTGATAGGCTTTATTCCTGCTGGGTTGTTCTCTTTGCAGAATTTAAGCAACTTGTTTCTCTACCAAAATCAGTTGTCTGGTGAGATACCCAAGTCGATCCGAGCATCAAATTTACTAAATGTTGACCTCTCTGCAAACAATTTACGCGGCACAATCCCTGAAGATTTTGGAAAGTTACAAAAGTTGCAGGTCCTGAACTTGTTTGCAAATCACTTGTCTGGTGAGATTCCAAGAAGTCTAGGCCTAATACCTACACTAAAAGGTTTTCGTGTATTCAACAACAGCTTAACTGGGAGCTTGCCACAAGAATTGGGTCTGCACTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAGTGGTTCCTTGCCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTAGTTGCCTTTTCCAATAATCTTAGTGGCGAATTGCCAAAAGGGCTTGGCAATTGCAGGACCCTACGTACAGTCCAGCTTTCAAACAACAACTTTTCTGGCGAAATTCCTCCAGGGCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGCGAGCTACCAGATAGCTTATCTTGGAATCTCTCGAGACTGGCAATAAATGACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCTGCTTGGCAAAACTTGATTGTGTTTGAGGCAAGCAACAATCTACTTTCTGGTAAGTTCCCTGATGGATTGACAAGTCTTCCTCGTCTTACCACACTTGTATTGAGTGGCAATCGACTCTCGGGCCAACTTCCGTCAACAATTGGTTCGTGGAAATCATTGAATACTCTAAATCTCTCAAGAAATGAACTTTCAGGCCATATTCCTGCAGCGTTTGGTTCTCTTCCTAACCTCCTTTACCTGGATTTATCAGGTAATAACTTCACAGGTGAAATCCCACCTGAAATTGGCCACTTAAGACTGGCTTCCCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTACGAGAATATAGCATATGGAAGGAGTTTCTTGAACGACCCCAAACTATGTACCGCCACCGGTGTACTCGACCTTCCGAGCTGTTACTCTAGACAAAGAGATTCAAAAGTTCAGTCCTCTAGATATCTTCCCCTCATTCTAGCCCTCACTGTTACCTTGCTCATAATTGCTTTACTATGGATTTCCCTCCTATATAAAAGTCATTGCAAAAAGGATGAAAGATGCCACCCTGACACATGGAAGCTGACTTCATTCCAAAGATTGGACTTCACAGAAATGAATATCTTGTCAAACTTGACAGAAACTAATCTGATCGGAAGCGGTGGATCTGGCAAAGTGTACTGCATAGACATCAACCATGCTGGTTATAATGTTGCCGTCAAAAGGATTTGGAGTAACAGTAAGTTGGATCAAAAACATGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATTCAAATATAGTGAAGTTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTCTTAGTCTATGAATACATGGAAAATCAGAGCCTAGATAGGTGGCTTCATAAAAAGAAGAAAAGGTTAACAGCTGCTGCAATGGATTTTGTTGAACAATATGTCTTAGACTGGCCGAGGAGGTTGCAGATTGCTATTGGAGCTGCACAAGGCCTCAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTGAAGTCGAGTAACATCTTATTAGACCGCGAGTTCCAGGCAAGGATAGCAGATTTTGGGCTGGCCAAGATGCTGGCCAGGCAGGGAGAGCCCCACACCATGTCTGCAATAGCAGGATCTTTCGGCTACATAGCCCCAGGTAAGTTCACTTCATACCACAACTTCCTTGGAAAAGACAAGCTCTTTAAACATCATAATATAATAGCTGCAGAGTATGCCTACACAACGAAAGTCAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTCCTGGAACTTACAACAGGAAGAGAACCTAACTGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCATTATAGTGAGGGAAAGCCTATTATTGATGCTCTTGATGAGGAAATCAAAAACCCATGCAATTTGGAAGAGATGACTTCTCTATTCAAACTTGGTCTAATTTGTACAAGCATGTTACCTGAAGTACGACCTTCGATGAAGGAAGTTCTGCATATTCTACGCCAATGCAGCCCTCCAGAAGCTTGTGATACGAGAAAGCATGCCATTGAATATGATGCTGTTCCCCTCCTTGGCACTCCTCTATGA 3087 42.6 MSRISLPFLTTLLPVYFFYFISIQFHVSSQAVNVDQAILLDLKEQWGNPPSLWLWNASSPPCDWPEIICRDGTVTGISLRNKNITGRFPIVICNLQNLTVLDLSWNYFPGEFPEVLYNCSKLKYLDLSGNYFVGPIPQDVERLRTLQYMDLSANNFSGDFPAALGRLSDLRTLNIYRTQCNGTLPAEIGNLSNLETLSMAYNTLLVPSPIPQDFKKLKKLKYMWMTKSNLIGEIPESFSDLLSLEHLDLSSNNLIGFIPAGLFSLQNLSNLFLYQNQLSGEIPKSIRASNLLNVDLSANNLRGTIPEDFGKLQKLQVLNLFANHLSGEIPRSLGLIPTLKGFRVFNNSLTGSLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLSGELPKGLGNCRTLRTVQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGELPDSLSWNLSRLAINDNKFWGQIPQNVSAWQNLIVFEASNNLLSGKFPDGLTSLPRLTTLVLSGNRLSGQLPSTIGSWKSLNTLNLSRNELSGHIPAAFGSLPNLLYLDLSGNNFTGEIPPEIGHLRLASLNLSSNQLSGKIPDEYENIAYGRSFLNDPKLCTATGVLDLPSCYSRQRDSKVQSSRYLPLILALTVTLLIIALLWISLLYKSHCKKDERCHPDTWKLTSFQRLDFTEMNILSNLTETNLIGSGGSGKVYCIDINHAGYNVAVKRIWSNSKLDQKHEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMENQSLDRWLHKKKKRLTAAAMDFVEQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQARIADFGLAKMLARQGEPHTMSAIAGSFGYIAPGKFTSYHNFLGKDKLFKHHNIIAAEYAYTTKVNEKIDVYSFGVVLLELTTGREPNCGDEHTSLAEWAWQHYSEGKPIIDALDEEIKNPCNLEEMTSLFKLGLICTSMLPEVRPSMKEVLHILRQCSPPEACDTRKHAIEYDAVPLLGTPL 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19264364 19267871 - Lsi08G010690.1 Lsi08g01069 668995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01069 1028 Pfam Protein kinase domain 694 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01069 1028 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 15 1017 - -
Lsi08g01069 1028 Gene3D Ribonuclease Inhibitor 527 605 IPR032675 -
Lsi08g01069 1028 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Lsi08g01069 1028 Gene3D Ribonuclease Inhibitor 455 526 IPR032675 -
Lsi08g01069 1028 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Lsi08g01069 1028 Pfam Leucine rich repeat 456 515 IPR001611 GO:0005515
Lsi08g01069 1028 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Lsi08g01069 1028 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 1017 - -
Lsi08g01069 1028 Gene3D Ribonuclease Inhibitor 143 209 IPR032675 -
Lsi08g01069 1028 Gene3D Transferase(Phosphotransferase) domain 1 772 1019 - -
Lsi08g01069 1028 Pfam Leucine Rich Repeat 243 262 IPR001611 GO:0005515
Lsi08g01069 1028 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515
Lsi08g01069 1028 SMART LRR_typ_2 95 119 IPR003591 -
Lsi08g01069 1028 SMART LRR_typ_2 312 336 IPR003591 -
Lsi08g01069 1028 SMART LRR_typ_2 191 216 IPR003591 -
Lsi08g01069 1028 SMART LRR_typ_2 550 574 IPR003591 -
Lsi08g01069 1028 SMART LRR_typ_2 241 265 IPR003591 -
Lsi08g01069 1028 SMART LRR_typ_2 502 526 IPR003591 -
Lsi08g01069 1028 SUPERFAMILY L domain-like 42 382 - -
Lsi08g01069 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Lsi08g01069 1028 SUPERFAMILY RNI-like 289 592 - -
Lsi08g01069 1028 Gene3D Ribonuclease Inhibitor 210 454 IPR032675 -
Lsi08g01069 1028 Gene3D Phosphorylase Kinase; domain 1 661 771 - -
Lsi08g01069 1028 ProSiteProfiles Protein kinase domain profile. 692 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01069 1028 SUPERFAMILY Protein kinase-like (PK-like) 683 1000 IPR011009 -
Lsi08g01069 1028 SMART serkin_6 692 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00781 Lsi-Chr2:7205457 Lsi08g01069 Lsi-Chr8:19264364 0 dispersed
Lsi08g01069 Lsi-Chr8:19264364 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi08g01068 Lsi-Chr8:19263751 Lsi08g01069 Lsi-Chr8:19264364 1.84E-83 tandem
Lsi01g00709 Lsi-Chr1:5668124 Lsi08g01069 Lsi-Chr8:19264364 7.90E-70 transposed
Lsi06g00220 Lsi-Chr6:2498893 Lsi08g01069 Lsi-Chr8:19264364 0 transposed
Lsi04g02324 Lsi-Chr4:30444518 Lsi08g01069 Lsi-Chr8:19264364 2.10E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83851 PF00069 Pkinase 1.20E-39 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01069 K00924 - csv:101219431 1812.73