Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01074 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCCCAATTCGCCATCCACTCCTCCTCCGACAACGACTCCACCACCGCCACCGCCGCCGGACCGGAGCATTTCATTGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTGATTGGCGACGGTGGAGGATTGTTTTACAATACTAATAATGGGAATAATAATTCAACGGAATCTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGACATTAGTGGCTCTAATTTAGCCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCACCCAATCCCCACAAACCACCGTCACTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCGGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCCTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCGACCAACTCCGAACCCGAAATTACCGCCACCGCCGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGCTCGGAGTATCATCCGGCGAAGGCCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCACAGTGGCGGACTGGCCCAATGGGACCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1056 53.12 MEAPEYFQINGYCSQFAIHSSSDNDSTTATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNTNNGNNNSTESSAVTVIESCNSSSFLEDISGSNLADAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPTQSPQTTVTHGRKAAAIFKPDIVSVPAKARSKRSRALPSNWNNSRLLPLSPTNSEPEITATAGPPHPIKKPPPKAATAKKKDSPELGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19327525 19329625 - Lsi08G010740.1 Lsi08g01074 669000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01074 351 PIRSF Txn_fac_GATA_plant 15 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi08g01074 351 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi08g01074 351 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 MobiDBLite consensus disorder prediction 174 238 - -
Lsi08g01074 351 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Lsi08g01074 351 Gene3D - 234 285 IPR013088 GO:0006355|GO:0008270
Lsi08g01074 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi08g01074 351 MobiDBLite consensus disorder prediction 180 204 - -
Lsi08g01074 351 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01074 - - - csv:101205219 494.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02328 Lsi08g01074 CCT
Lsi04g02328 Lsi08g01074 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00519 Lsi-Chr7:5457234 Lsi08g01074 Lsi-Chr8:19327525 2.47E-91 dispersed
Lsi08g00719 Lsi-Chr8:15547596 Lsi08g01074 Lsi-Chr8:19327525 1.02E-45 dispersed
Lsi03g01295 Lsi-Chr3:23772945 Lsi08g01074 Lsi-Chr8:19327525 5.62E-37 transposed
Lsi09g01169 Lsi-Chr9:18922604 Lsi08g01074 Lsi-Chr8:19327525 6.52E-40 transposed
Lsi04g02328 Lsi-Chr4:30490393 Lsi08g01074 Lsi-Chr8:19327525 2.29E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01074 CCT,ECH 101 351 C2C2-Gata Transcription Factor Family AT5G25830 57.0 2.8e-69 259.2
Lsi04g02328 CCT,ECH 39 352 C2C2-Gata Transcription Factor Family AT5G25830 50.9 6.3e-69 258.1
Lsi05g01573 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 60.4 8.4e-37 150.2
Lsi07g00224 . 21 299 C2C2-Gata Transcription Factor Family AT5G66320 50.5 6.7e-66 248.1
Lsi01g00626 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.8 1.2e-42 170.2
Lsi07g01258 . 72 580 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.9e-128 456.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25789 PF00320 GATA 1.80E-15 CL0167 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01074 Lsi_Chr08 FPKM 10.48062 15.656851 5.715285 5.399013 3.075352 3.471391 3.511302 1.996281 1.945056 1.339909