Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01074 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCCCAATTCGCCATCCACTCCTCCTCCGACAACGACTCCACCACCGCCACCGCCGCCGGACCGGAGCATTTCATTGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTGATTGGCGACGGTGGAGGATTGTTTTACAATACTAATAATGGGAATAATAATTCAACGGAATCTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGACATTAGTGGCTCTAATTTAGCCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCACCCAATCCCCACAAACCACCGTCACTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCGGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCCTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCGACCAACTCCGAACCCGAAATTACCGCCACCGCCGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGCTCGGAGTATCATCCGGCGAAGGCCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCACAGTGGCGGACTGGCCCAATGGGACCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1056 53.12 MEAPEYFQINGYCSQFAIHSSSDNDSTTATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNTNNGNNNSTESSAVTVIESCNSSSFLEDISGSNLADAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPTQSPQTTVTHGRKAAAIFKPDIVSVPAKARSKRSRALPSNWNNSRLLPLSPTNSEPEITATAGPPHPIKKPPPKAATAKKKDSPELGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19327525 19329625 - Lsi08G010740.1 Lsi08g01074 669000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01074 351 PIRSF Txn_fac_GATA_plant 15 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi08g01074 351 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi08g01074 351 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 MobiDBLite consensus disorder prediction 174 238 - -
Lsi08g01074 351 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Lsi08g01074 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Lsi08g01074 351 Gene3D - 234 285 IPR013088 GO:0006355|GO:0008270
Lsi08g01074 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi08g01074 351 MobiDBLite consensus disorder prediction 180 204 - -
Lsi08g01074 351 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02328 Lsi08g01074 CCT
Lsi04g02328 Lsi08g01074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00519 Lsi-Chr7:5457234 Lsi08g01074 Lsi-Chr8:19327525 2.47E-91 dispersed
Lsi08g00719 Lsi-Chr8:15547596 Lsi08g01074 Lsi-Chr8:19327525 1.02E-45 dispersed
Lsi03g01295 Lsi-Chr3:23772945 Lsi08g01074 Lsi-Chr8:19327525 5.62E-37 transposed
Lsi09g01169 Lsi-Chr9:18922604 Lsi08g01074 Lsi-Chr8:19327525 6.52E-40 transposed
Lsi04g02328 Lsi-Chr4:30490393 Lsi08g01074 Lsi-Chr8:19327525 2.29E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25789 PF00320 GATA 1.80E-15 CL0167 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01074 - - csv:101205219 494.197