Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01082 ATGCCAGGCCCCGCCTTTGATTCTTCTCCCAGCGGTGCCCTAGTCTTGTCCTCTTCGGAGGCCCGAGAAGTGGTCTACCCTCTCCGACACGAACTTAAGCCTCCTATAGCTCGATTATCCATTTCCTGGGCCAGAGGCAACTCCTTCCGTGTTTCCATTTTCAAGCAGCAGTCTGGTGACCATTCTTCAGACTCTGGTGACGGTGAAGTTGGCGGGCAAGTATTGGAGGTGAAGATCAGAAATGGAGACGGAGAAATTAGTGCTGCCGAGTTCCGGAGGATAGCGTACGGTTCAGTCTCCCCCTTTGCGCTTCTTCAGAGTCGGAAACATATGGCTTCGGGATTGTCGAAGATGTCGATGGGTTTGGCACGGTTTAATCCGGACGGGTGGGAATACTTAGCGGAGTATAGCAAGGACATCAGTTCAATTATTGGTAATCCGAAGTCAATTCCTAGCTCAGCGATTGAGGACCCCCTGGAAATTTTGAAGGCGAGTTGGTGTGAATATGCCTGGAAGTGTTTGCATGTCGTTAAGTTTAATAGCAGTGTCATTGTTGACATGAAGTTGCTGATGCTAAAACTTTCTTTTTTATGCATAAGTAATCTTAAAGTCGAGGAGCCTACTTGTTTGAAAGCTGCATGGGAGCTGATGGATGTGTTTTATGCCGACAAGCAGTCTCATTGGTGGCTTAATGAACGCCTTGTTGATTGGTTAGCTGTACTGATCTTCCCATCTTCATTCTTTTCTTTAAGAACTTTATCGGAATATGATAGCGTCCTCTCAACCACACAATCAACTATCCATTCAAAACTGGTTGACTTTCGAAAAGAACTTAATAACTTACAGGTAGTTGAGGATAATCCAAGTTATTGGGATTTGATTTTATCAGCATTAGCAGTTGGCTGGCAAGAGATTGTGGTTAAAATGTTGCGCCTACATGGATCTTATCAGCTGGATCAACTTAGCAATCGGGAGACAGAGAATGGACTGGTAGAGGCAGTGGCTTTTCTTATTTCAGAAATGCCGTGCATGCGCCCTGAGTTGGGTTCTGGTAGATTTGGTGAATGCTTCAAAACCAAGCCCGATTTTACCAAGGCATGGGAAAAATGGCGTTCGAAAATAACCAAGTTGGACGGCTCTGGGTTTTGGGTTCACTGTGCTCATGTTGAGACCAGAAAAGGTTTGCGGAACATGCTTCAGATCATTCTAGGAAATGTTGAGAGCCTCAGTGGTGCAACCTGCAACTGGATGGAGCTGTATATCTCTCAGCTTTTATATGTTAGACCATTCGCAATGAATAACCTGACACACAGTCTCTGCAGCCTGCACATTGCCCTTCAAGAGGCTAATATCTATTTCTGTCTAGGTCTAGAAAGCATGTACAACCTTGCAGAAAGATGTATGCAGTTAAAACCAGCTTCTAATACTGATCGCTTGATGGGGCTAATGATTGGAATTCTTGGAGAAAGTACAGAGGTAAGGAATGTGGATTATATCTTATCTGATCTTCTATTTTTGACTTGGGAGTTTCTCTGTCGTGGCTCAGGTTGTTTTAGCGGAGTGATGGTTACACATGCCATGGAATTGTTGACTGAAGAGAGTGATCAGGCAGAGACTCTTCTACATGAAGAGCGCTATGATCTTGGGGGAGTTAGCATAGAGGAACTTCATCGTCTTGTTTATGCTCAAGTTCTCTGTTCACATGCATTTACTTGGCAGATCGCTCCAATTTACTTGACATCATGCGCAAAGCAGGGAACTGGTTTTTTAGAAACTTTGTTATACAGTCAAGTGGTTCACCATAATGGGATGCTACTTAAGAATTTAGAGATATGTCGTTTATATGAACTTGACAGTCTTAGTTCAAACATTATGAAGTTACTACTTTTCAGCCTACAACAAGGCAAATTTTGTAATGGACACAAATTGCTGGAGTTTACCATTGGAAGCATGGTAGGAAGGGTTGTGGAGTTTTTTGGCTTAGGCAAGCTAGGGATGAAGTTCGTCTTAACAAGATTGCCCAGCAATTGTTTGATTCAGTTGGAAAGTCCATATCTGATGAAACATTGCTTATTAATTGTTTATATTGATGCATCACTACTAGTGAAAACATTCCGTATTTGTGCAACCAATCTCATATTGAATTCATCTGTTTTACAGCAATGGGAAGGATTAATCGAATTGTTGGGTTCTGAGTCTAAAAATACTGGAGGCCTTGAGTTTCTCCACAAGTACAGGGATTTCAAAAAATCGCTTCATCAGGTTCACCACAAGGGGAAAACTACAGGTGTTGCACAGTCTGCAGTGGACTCTCTCATTGCGAAGATGGGTAGGGTTGGGTTCGTAACCCTGATGAAAAATCAAGCATTTCGGGGACTTGATTCGTTCTCATCCCTCTCTAATCAAATCCCTTATTATTTGACCTTTTATAGTCACCAATCTTATTTGACTCTGCAGCTTATGAAGAACCCTTCGACGCCTCAGCGCTTTTGGCTACCGATTTTAAATGACTCGTTGAAGCTTATTGATTGGCACGAAGGTCCTCTACTAAACATTGAGCAGACCAACCTTTTGTTGAATAAACTACAAGAGCTGTCAATGGCGAGGCTTCGACCTGACTTCGTCGAATCTAACTTGCCACCTCTGGCCTTGAGCTCCATCAGGTTGGCTCTTGCAAAAAATCTTGGACGTGCTTTTCTCGAGGGGTGA 2709 43.19 MPGPAFDSSPSGALVLSSSEAREVVYPLRHELKPPIARLSISWARGNSFRVSIFKQQSGDHSSDSGDGEVGGQVLEVKIRNGDGEISAAEFRRIAYGSVSPFALLQSRKHMASGLSKMSMGLARFNPDGWEYLAEYSKDISSIIGNPKSIPSSAIEDPLEILKASWCEYAWKCLHVVKFNSSVIVDMKLLMLKLSFLCISNLKVEEPTCLKAAWELMDVFYADKQSHWWLNERLVDWLAVLIFPSSFFSLRTLSEYDSVLSTTQSTIHSKLVDFRKELNNLQVVEDNPSYWDLILSALAVGWQEIVVKMLRLHGSYQLDQLSNRETENGLVEAVAFLISEMPCMRPELGSGRFGECFKTKPDFTKAWEKWRSKITKLDGSGFWVHCAHVETRKGLRNMLQIILGNVESLSGATCNWMELYISQLLYVRPFAMNNLTHSLCSLHIALQEANIYFCLGLESMYNLAERCMQLKPASNTDRLMGLMIGILGESTEVRNVDYILSDLLFLTWEFLCRGSGCFSGVMVTHAMELLTEESDQAETLLHEERYDLGGVSIEELHRLVYAQVLCSHAFTWQIAPIYLTSCAKQGTGFLETLLYSQVVHHNGMLLKNLEICRLYELDSLSSNIMKLLLFSLQQGKFCNGHKLLEFTIGSMVGRVVEFFGLGKLGMKFVLTRLPSNCLIQLESPYLMKHCLLIVYIDASLLVKTFRICATNLILNSSVLQQWEGLIELLGSESKNTGGLEFLHKYRDFKKSLHQVHHKGKTTGVAQSAVDSLIAKMGRVGFVTLMKNQAFRGLDSFSSLSNQIPYYLTFYSHQSYLTLQLMKNPSTPQRFWLPILNDSLKLIDWHEGPLLNIEQTNLLLNKLQELSMARLRPDFVESNLPPLALSSIRLALAKNLGRAFLEG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19387416 19395148 + Lsi08G010820.1 Lsi08g01082 669008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01082 902 Pfam Nup85 Nucleoporin 84 628 IPR011502 -
Lsi08g01082 902 Pfam Nup85 Nucleoporin 818 864 IPR011502 -
Lsi08g01082 902 PANTHER FROUNT PROTEIN-RELATED 714 901 IPR011502 -
Lsi08g01082 902 PANTHER FROUNT PROTEIN-RELATED 22 628 IPR011502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01082 K14304 NUP85; nuclear pore complex protein Nup85 - csv:101217533 1125.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g286 . . . . . . . . . Cmo12g00201 . . . Car12g00234 . Cpe07g00212 . Bhi04g00856 . . . . . . . . . . . . . . . Cone17ag1127 Cone20ag0595 . . . Cme03g01748 Blo17g00066 . . Bda13g01329 Bpe14g00519 . . . . . . . Cma12g00249 . . . . . . . . . . . Cla08g01219 Cam08g1678 Cec08g1256 Cco08g1376 Clacu08g1376 . Cre08g1161 Lsi08g01082 . Chy03g01252 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009896 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01082 Lsi_Chr08 FPKM 73.772995 72.628372 112.973633 112.666565 81.870949 87.268646 88.841507 90.781654 92.774834 103.290329