Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01083 ATGGCTCACCTCTTCAGAGACCTCACTCTGGGCCATTCCAAGAGAGAGTCCACTCCTCCGCCGCCGTCTCCGCCGCCTTCTATTACCCCCGTCCGCCCTGTCATTGTTGCGCCCGATCTTCCTTCTCCATTTGGCCAACTTGCTTCTCAACTCTCCGATTCCGATCTCCGTCTCACCGCTTTCGAGATCTTTGTCGCCGCCTGTCGAACCTCTTCCGGCAAGCATCTCACGTATGTCTCTTCCGCCAATTCACATGCAGACTCACCCACTAATCACCACTCCCCGAGCTCCCCTGGATTGCAGCGATCTCTCACTTCCACCGCCGCCTCCAAGGTTAAGAAGGCATTGGGCCTCAAATCTCCCGGTTCTGGCTCCAAGAAGAGTCCTGGCTCCGGCTCCAGTCAAGGCAAGTCTAGGCGCCCTTTGACTGTGGGCGAGTTGATGAGGTTCCAAATGGGGGTTTCTGAGACTGTCGATTCAAGAGTTCGGAGAGCGCTCCTTAGAATTTCTGCTGGCCAGGTGGGAAGAAGAATTGAGTCAGTTGTAGTTCCTCTAGAACTATTGCAGCAGCTTAAGGCTTCAGATTTTACAGATCATCAGGAGTATGAAGCTTGGCAAAAGCGGACTTTGAAAGTTTTAGAAGCCGGTCTTCTTTTGCATCCCAAAATCCCCCTTGATAAATCAAATGCTTCAGGACAGCGGTTAAAACAAATAATTCATGCAGCATTAGATAGGCCCATAGAAACTGGGAGAAATAATGAGTCTATGCAAGTTCTTCGTAGTGCTGTTATGTCTCTTGCTTCCAGATCATTGGATGGATCACTAAACGAGGTATGCCACTGGGCCGATGGGATGCCACTAAATCTCCAGCTTTATGTGATGCTGCTCGAAGCCTGTTTTGATGCAAATGATGAAACGTCTATCATTGAAGAAATTGATGAGCTTATGGAGCATATTAAGAAGACTTGGGGAATGCTTGGGTTGAACCAAATGTTGCACAATCTTTGTTTTACCTGGGTTTTATTTCACCGATTTGTTGCTACTGGCCAAGCTGAACTGGATTTGCTTTATGGTGCTGATAGTCAGCTAACAGAAGTTGCTAAAGATGCTAAGATCTCAAAAGATTCTGAATATGCCAAGGTTTTGAGTTCTACATTGAGCTCAATTCTGGGATGGGCAGAGAAGAGGCTACTTGCATATCATGACACGTTTGCTTCTGGGAATATTGATACCATGCAAGGCATTGTATCTTTGGGGGTATCAGCAGCCAGAATTTTAGTTGAAGATGTATCAAATGAGTACCGTAGGAGGAGGAAAGGCGAGGTTGATGTTGCACGTAGCAGGATTGACACTTACATTAGATCATCACTGCGCACTGCTTTTGCTCAGAAAATGGAGAAGGCAGATTCAAGTAGGAGAGCATCAAAAAGCCGGCCAAATTCTCTTCCCCTCCTAGCCATTCTTGCAAAGGATGTTGGTGATCTTGCAGTCAATGAGAAGGAGGTTTTCAGTCCGATACTCAAGAAATGGCATCCATTTGCTGCAGGAGTGGCTGTAGCCACTCTTCATGCTTGTTATGGAAATGAATTGAAACAATTTGTTTCGGGTATTGGAGAGTTAACACCAGATGCTGTACAAGTGCTTAGAGCTGCTGATAAGCTAGAGAAAGATCTTGTGCAAATAGCAGTTGAAGATTCTGTGGACAGCGATGACGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTTTGAGGCTGATTCTGCAATTGCCAATCTTGTTAAATCATGGATGAAAACAAGATTGGACAGAATGAAGGAATGGGTGGATCGAAATTTGCAACAAGAGGTATGGAATCCAAAAGAAAATCAAGGATTTGCACCATCTGCTGTTGAGGTTCTGCGAATAATGGATGAAACATTGGATGCATACTTTCAGCTGCCGATACCAATGCATCCTGCTTTACTTCCTGATTTGGTGACTGGTCTTGATAGATGTCTTCAGTATTATATTACGAAAGCGAGATCTGGATGTGGATCACGAAATACATATATTCCAACTATGCCAGCATTGACCAGATGTACCATTGGATCAAAGTTCCAAGGCTTTGGGAAGAAGAAAGAAAAACTACCAAATTCTCAGAGGAAAAATGCCCAGGTTGCAACATTGAATGGGGACAATTCACTCGGGATGTCTCATATCTGTGTTCGTATAAACACATTCCATCGAATTCGAGGTGAGTTGGAGGTTATGGAGAAAAGAATAGTCACTCATCTTAGGAATTCTGAATCTGCTCATGCAGAAGATTTTTCTAATGGTTTGGGGAAGAAGTTCGAACTCTCGCCGGCTGCTTGTGTGGAAGGAGTCCAGCAACTCAGTGAGGCCGTTGCTTACAAAGTCATTTTCCACGATTTAAGTCATGTTTTATGGGATGGTCTGTATGTAGGGGAGCCTTCATCTTCTAGAATTGAGCCTTTCCTTCAGGAGCTTGAGCGGCACTTGCTCATCATTTCTGACACAGTGCATGAAAGAGTTCGAACAAGGATCATCACTGACATAATGAAAGCTTCTTTTGATGGATTCTTACTTGTTTTGCTTGCTGGAGGCCCTTCGCGTGCCTTCTCCCGGCAAGACTCCCAAATAATTGAAGACGATTTCAAATTACTCAAAGATTTATTCTGGGCAAATGGGGATGGTTTACCATTGGAATTGATTGATAAGTTCTCAACCACATTGAGAGGCATCCTTCCTGTTATGCGAACTGATACAGAGAGTATCATAGAGCGGTTCAAACGCGTGACAGTAGAGACATTCGGATCTTCTGCAAAATCCAGGCTTCCATTACCTCCTACTTCAGGGCAATGGAATCCAACTGAGCCAAACACTCTTCTACGTGTTCTGTGCTACCGAAATGACGATGCAGCTTCAAAGTTCCTCAAGAAAACTTACAATTTGCCTAAGAAGTTGTAA 2967 44.76 MAHLFRDLTLGHSKRESTPPPPSPPPSITPVRPVIVAPDLPSPFGQLASQLSDSDLRLTAFEIFVAACRTSSGKHLTYVSSANSHADSPTNHHSPSSPGLQRSLTSTAASKVKKALGLKSPGSGSKKSPGSGSSQGKSRRPLTVGELMRFQMGVSETVDSRVRRALLRISAGQVGRRIESVVVPLELLQQLKASDFTDHQEYEAWQKRTLKVLEAGLLLHPKIPLDKSNASGQRLKQIIHAALDRPIETGRNNESMQVLRSAVMSLASRSLDGSLNEVCHWADGMPLNLQLYVMLLEACFDANDETSIIEEIDELMEHIKKTWGMLGLNQMLHNLCFTWVLFHRFVATGQAELDLLYGADSQLTEVAKDAKISKDSEYAKVLSSTLSSILGWAEKRLLAYHDTFASGNIDTMQGIVSLGVSAARILVEDVSNEYRRRRKGEVDVARSRIDTYIRSSLRTAFAQKMEKADSSRRASKSRPNSLPLLAILAKDVGDLAVNEKEVFSPILKKWHPFAAGVAVATLHACYGNELKQFVSGIGELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPFEADSAIANLVKSWMKTRLDRMKEWVDRNLQQEVWNPKENQGFAPSAVEVLRIMDETLDAYFQLPIPMHPALLPDLVTGLDRCLQYYITKARSGCGSRNTYIPTMPALTRCTIGSKFQGFGKKKEKLPNSQRKNAQVATLNGDNSLGMSHICVRINTFHRIRGELEVMEKRIVTHLRNSESAHAEDFSNGLGKKFELSPAACVEGVQQLSEAVAYKVIFHDLSHVLWDGLYVGEPSSSRIEPFLQELERHLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFSRQDSQIIEDDFKLLKDLFWANGDGLPLELIDKFSTTLRGILPVMRTDTESIIERFKRVTVETFGSSAKSRLPLPPTSGQWNPTEPNTLLRVLCYRNDDAASKFLKKTYNLPKKL 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19394258 19401069 - Lsi08G010830.1 Lsi08g01083 669009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01083 988 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 819 929 IPR014772 -
Lsi08g01083 988 MobiDBLite consensus disorder prediction 81 110 - -
Lsi08g01083 988 MobiDBLite consensus disorder prediction 81 142 - -
Lsi08g01083 988 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 545 687 IPR014770 -
Lsi08g01083 988 PANTHER PROTEIN UNC-13 HOMOLOG 2 988 IPR008528 -
Lsi08g01083 988 MobiDBLite consensus disorder prediction 124 140 - -
Lsi08g01083 988 MobiDBLite consensus disorder prediction 17 32 - -
Lsi08g01083 988 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g01083 988 PANTHER ELONGATION FACTOR TS (DUF810) 2 988 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01083 - - - csv:101217303 1819.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00641 Lsi-Chr5:7958686 Lsi08g01083 Lsi-Chr8:19394258 0 dispersed
Lsi05g01760 Lsi-Chr5:24972303 Lsi08g01083 Lsi-Chr8:19394258 0 dispersed
Lsi07g01385 Lsi-Chr7:20111437 Lsi08g01083 Lsi-Chr8:19394258 1.85E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g288 . . . . Bpe02g01184 Bpe02g00248 . . Cmo05g00616 Cmo12g00203 . Cma05g00591 . Car12g00235 Sed01g1263 Cpe07g00213 . Bhi04g00855 Tan02g2557 Cmetu03g1871 . Hepe10g0368 . Lcy13g1418 . . . . . . . . . Cone17ag1126 Cone20ag0596 . . . Cme03g01747 Blo17g00067 . Bda01g00938 Bda13g01330 Bpe14g00518 . Bma01g01343 . . . . . Cma12g00250 . Car05g00535 Cpe11g00517 . . . . . . . . Cla08g01220 Cam08g1679 Cec08g1257 Cco08g1377 Clacu08g1377 . Cre08g1162 Lsi08g01083 . Chy03g01251 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001480 3 2 5 2 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01083 Lsi_Chr08 FPKM 4.177543 3.476638 0.521626 0.718467 0.261246 0.0 0.167481 0.0 0.0 0.0