Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01084 ATGGGATGCGGAAAAGCTTTGCTCTGTGTTAAAGACGAAGCTGCTACAGTATGGGTTCGCTCCGAGCATTTGGATAAGCTGAAATGTCGTGGTAATCAAGTGCGAAGGATATGGATGTCTCCGGTCTGTATGGGCAGGCGTTCCTGCAAAATTGCTGGCAGGAAGGGTGCTCAAGATGCAAAGAAGGCAAAGCTTTATTCTAGGATTGGAAAGGAGGTCGTTTCTGCCGTTAAAAAGGGAGGAACCAGCCCCATATCCAATACCCTTCTGTCTGCCGTACTTGAGAAAGCCAAGGAGCTTGATGTTCCAAAAGAAATTCTTGATCGAAACATTAAGAGGGCTTCCGAGAAAGGACAAGAGGCTTACATAGAGAAAATTTATGAGGTATATGGTTATGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGATAAATCGTTCAGTGGCAGCTGTCAGAGAAGTAGTGAAGGACTATGGTGGAAAGATGGCAGATCCAGGATCTGTTACGTTCAAGTTCAGACGCGCTCGAGTTGTGAATGTCAAGGCCTCCGATGTTGACAAAGACCAGCTTCTCACCATATCTTTAGATGCTGGTGCAGAAGATGTTATTGAACCGCCAGAATATGAAGATGATACAGAAGAAGAAAAGTTGGAAAGATATTACAAGATTGTGACTTCCACAGAGAACTACTCGGGAATACTATCCAAGTTACGTGAAGAAAACATAAAGTTTGAACCTGACAGTGGCTCTGAGCTACTTCCTATAAGCTCTATTGAGGTGGATGATGAAGCTATGGACTTGAATAAAGAACTAATGGACAAGTTGCTTGAACTCGATGATGTTGATGCTGTTTATACTGATCAAAAGTGA 876 43.15 MGCGKALLCVKDEAATVWVRSEHLDKLKCRGNQVRRIWMSPVCMGRRSCKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGTSPISNTLLSAVLEKAKELDVPKEILDRNIKRASEKGQEAYIEKIYEVYGYGGASMVVEVSTDKINRSVAAVREVVKDYGGKMADPGSVTFKFRRARVVNVKASDVDKDQLLTISLDAGAEDVIEPPEYEDDTEEEKLERYYKIVTSTENYSGILSKLREENIKFEPDSGSELLPISSIEVDDEAMDLNKELMDKLLELDDVDAVYTDQK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19408568 19414905 + Lsi08G010840.1 Lsi08g01084 669010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01084 291 PANTHER UNCHARACTERIZED 29 291 IPR002876 -
Lsi08g01084 291 PANTHER TRANSLATIONAL ACTIVATOR OF CYTOCHROME C OXIDASE 1 29 291 - -
Lsi08g01084 291 Gene3D - 173 258 IPR026564 -
Lsi08g01084 291 Gene3D - 47 121 IPR017856 -
Lsi08g01084 291 Pfam Transcriptional regulator 49 289 IPR002876 -
Lsi08g01084 291 Gene3D - 125 288 IPR026564 -
Lsi08g01084 291 Hamap Probable transcriptional regulatory protein YebC [yebC]. 44 291 IPR002876 -
Lsi08g01084 291 SUPERFAMILY YebC-like 44 290 IPR029072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01084 - - - csv:101217059 447.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g290 . . . . . . . . Cmo05g00617 . . Cma05g00592 . . . . . Bhi04g00849 . . . . . Lcy13g1417 . . . . . . . . . Cone17ag1125 Cone20ag0597 . . . Cme03g01745 Blo17g00068 . . Bda13g01331 Bpe14g00517 . . . . . . . . . Car05g00536 Cpe11g00518 . . . . . . . . Cla08g01221 Cam08g1680 Cec08g1258 Cco08g1378 Clacu08g1378 . Cre08g1163 Lsi08g01084 . Chy03g01250 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006621 1 7 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01084 Lsi_Chr08 FPKM 88.981476 99.44017 14535.45996 13957.33691 142.044815 117.375191 129.845779 9.542623 6.781389 3.506469