Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01086 ATGAGCACTAAACAAATGAGTCCTTCTTCAGAAACAGAGTCCTCCACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCCAATTCAGAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGGAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCCCGCATTTGGTTAGGAACTTTTCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTTTAAGCATTAAAGGAAATTCTGCTATTCTTAATTTTCCTGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCTGCTGCTGCTAAAGCTGCTCATATGCATAATCTTTCTTCCAATACTAATCTTAATAATAAGAATAATACTAATTCCTCCTCTGCTTTCTCCGATGAACTTACTGAGATCGTTGAGTTACCCAGTCTTGAAACGAGTTATGATGCCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCTTGGCTTTATGCACCGCCATGGTTGCAGAGCTTGGAGGAGGAGTATGATGATGATAATGGGGATTGTGGTAAGTTGGGAATGGGATTTCTTTCTACTGGGTTCAAAGGGTTTTTATGGAATTATTGA 678 41.74 MSTKQMSPSSETESSTTSSSSSSDSNKKPKRINNNSNSNSEHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNKNNTNSSSAFSDELTEIVELPSLETSYDAGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGKLGMGFLSTGFKGFLWNY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19470778 19471455 - Lsi08G010860.1 Lsi08g01086 669012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01086 225 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Lsi08g01086 225 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Lsi08g01086 225 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Lsi08g01086 225 MobiDBLite consensus disorder prediction 1 46 - -
Lsi08g01086 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 199 - -
Lsi08g01086 225 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Lsi08g01086 225 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Lsi08g01086 225 MobiDBLite consensus disorder prediction 1 43 - -
Lsi08g01086 225 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Lsi08g01086 225 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Lsi08g01086 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 199 - -
Lsi08g01086 225 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00816 Lsi-Chr6:17232586 Lsi08g01086 Lsi-Chr8:19470778 6.40E-56 dispersed
Lsi07g00520 Lsi-Chr7:5483691 Lsi08g01086 Lsi-Chr8:19470778 1.16E-46 dispersed
Lsi07g01282 Lsi-Chr7:18716823 Lsi08g01086 Lsi-Chr8:19470778 7.64E-42 dispersed
Lsi08g01086 Lsi-Chr8:19470778 Lsi11g00240 Lsi-Chr11:2429121 2.02E-51 dispersed
Lsi04g02331 Lsi-Chr4:30517216 Lsi08g01086 Lsi-Chr8:19470778 1.01E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25790 PF00847 AP2 5.50E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01086 K09286 - csv:101206242 335.88