Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01088 ATGATGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGATACGAAGGTTCTTGCTGCAGTCTATGGTCCTAAAGCGGGAACGAAGAAAAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAGATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGCATCTCAAAATGACGCTGAAGTTTTTATAGTCGTGAAAAGTCTCCCTCACTCTCGCTCGCCTGTCCTCTCTCTACATACATGCATTCATACTACTCCTGACATGGATATTTACATAGCACCAGAGCATCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCGCTTGTAGATGCTGGAATTCCTTTAAGGCATCTTGCTGGTAATCAAGTTTTATGGTCTTATTATTCATGTCTTCGCCTGATGAATAAATGGTTGGCACTGACTGCTCTTAAACTGCATATGGCAGTTGCGATTTCCTGTTGTTTGTCTGAGAGTGGATACGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATTTGTACATTTGGTCTTCCCAAACTCACCTATCTCAGTAGTTCCTGAAGGACCTACACAAGTTGTTGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACACAGGGTGCAATGTCAGTGGATGATTATATTCTCTGCCTGGAACGGGGGCGTGCTGCTACTGCAAAAATGTCTGATTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGCTGGCTGA 894 43.4 MMLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQASQNDAEVFIVVKSLPHSRSPVLSLHTCIHTTPDMDIYIAPEHLLPCAINASCAALVDAGIPLRHLAGNQVLWSYYSCLRLMNKWLALTALKLHMAVAISCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPISVVPEGPTQVVGEPLEHGIITSVTQGAMSVDDYILCLERGRAATAKMSDFLRRSLQPQLPTDSSKAG 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19487727 19493335 + Lsi08G010880.1 Lsi08g01088 669014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01088 297 Pfam 3' exoribonuclease family, domain 1 3 158 IPR001247 -
Lsi08g01088 297 Gene3D - 1 295 IPR027408 -
Lsi08g01088 297 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 157 IPR020568 -
Lsi08g01088 297 PANTHER EXOSOME COMPLEX COMPONENT RRP46 2 163 - -
Lsi08g01088 297 PANTHER EXOSOME COMPLEX COMPONENT RRP46 190 287 - -
Lsi08g01088 297 SUPERFAMILY Ribonuclease PH domain 2-like 190 287 IPR036345 -
Lsi08g01088 297 CDD RNase_PH_RRP46 3 282 - -
Lsi08g01088 297 PANTHER EXOSOME COMPLEX COMPONENT 2 163 - -
Lsi08g01088 297 PANTHER EXOSOME COMPLEX COMPONENT 190 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01088 K12590 RRP46, EXOSC5; exosome complex component RRP46 - csv:101205616 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01088 Lsi-Chr8:19487727 Lsi10g01257 Lsi-Chr10:16812060 7.95E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01088 Lsi_Chr08 FPKM 0.0 0.013393 0.0 0.0 0.0 0.0 0.0 0.141119 0.0 0.279645