Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01089 ATGGCCAGAATTGCAATGGGAAGCATCAGCGAGGCCTCCCAGCCCGACTGCATCCGAGCCCTCATCGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCCAACACACTAGTGGGTTTATTCGCCGTCGCTGTTGCACATGCGCTTGTCGTGGCTGTGATGATCTCCACCGGCCACATTTCCGGTGGCCACCTCAACCCTGCTGTCACTCTTGGTCTCCTTTTTGGTGGCCAAATCACAGTCGTCACTCCAATTCATACATTAGCAAGTGGAGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTACTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG 660 50.61 MARIAMGSISEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLFGGQITVVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENLLIQRSHVPLPREEDGY 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19491710 19493129 - Lsi08G010890.1 Lsi08g01089 669015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01089 219 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Lsi08g01089 219 PANTHER AQUAPORIN TIP4-1 2 95 - -
Lsi08g01089 219 PANTHER AQUAPORIN TIP4-1 95 217 - -
Lsi08g01089 219 Pfam Major intrinsic protein 100 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g01089 219 Pfam Major intrinsic protein 12 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g01089 219 SUPERFAMILY Aquaporin-like 13 213 IPR023271 -
Lsi08g01089 219 PANTHER AQUAPORIN-8 2 95 IPR034294 -
Lsi08g01089 219 PANTHER AQUAPORIN-8 95 217 IPR034294 -
Lsi08g01089 219 Gene3D Glycerol uptake facilitator protein. 96 213 IPR023271 -
Lsi08g01089 219 Gene3D Glycerol uptake facilitator protein. 2 95 IPR023271 -
Lsi08g01089 219 PRINTS Major intrinsic protein family signature 183 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g01089 219 PRINTS Major intrinsic protein family signature 146 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g01089 219 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g01089 219 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01089 Lsi-Chr8:19491710 Lsi09g00431 Lsi-Chr9:4593972 1.72E-63 dispersed
Lsi08g01089 Lsi-Chr8:19491710 Lsi03g01989 Lsi-Chr3:31267990 3.58E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01089 K09873 - csv:101205380 386.341