Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01089 | ATGGCCAGAATTGCAATGGGAAGCATCAGCGAGGCCTCCCAGCCCGACTGCATCCGAGCCCTCATCGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCCAACACACTAGTGGGTTTATTCGCCGTCGCTGTTGCACATGCGCTTGTCGTGGCTGTGATGATCTCCACCGGCCACATTTCCGGTGGCCACCTCAACCCTGCTGTCACTCTTGGTCTCCTTTTTGGTGGCCAAATCACAGTCGTCACTCCAATTCATACATTAGCAAGTGGAGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTACTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG | 660 | 50.61 | MARIAMGSISEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLFGGQITVVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENLLIQRSHVPLPREEDGY | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19491710 | 19493129 | - | Lsi08G010890.1 | Lsi08g01089 | 669015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01089 | 219 | ProSitePatterns | MIP family signature. | 77 | 85 | IPR022357 | - | |
Lsi08g01089 | 219 | PANTHER | AQUAPORIN TIP4-1 | 2 | 95 | - | - | |
Lsi08g01089 | 219 | PANTHER | AQUAPORIN TIP4-1 | 95 | 217 | - | - | |
Lsi08g01089 | 219 | Pfam | Major intrinsic protein | 100 | 200 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi08g01089 | 219 | Pfam | Major intrinsic protein | 12 | 95 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi08g01089 | 219 | SUPERFAMILY | Aquaporin-like | 13 | 213 | IPR023271 | - | |
Lsi08g01089 | 219 | PANTHER | AQUAPORIN-8 | 2 | 95 | IPR034294 | - | |
Lsi08g01089 | 219 | PANTHER | AQUAPORIN-8 | 95 | 217 | IPR034294 | - | |
Lsi08g01089 | 219 | Gene3D | Glycerol uptake facilitator protein. | 96 | 213 | IPR023271 | - | |
Lsi08g01089 | 219 | Gene3D | Glycerol uptake facilitator protein. | 2 | 95 | IPR023271 | - | |
Lsi08g01089 | 219 | PRINTS | Major intrinsic protein family signature | 183 | 203 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi08g01089 | 219 | PRINTS | Major intrinsic protein family signature | 146 | 168 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi08g01089 | 219 | PRINTS | Major intrinsic protein family signature | 59 | 83 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi08g01089 | 219 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01089 | Lsi-Chr8:19491710 | Lsi09g00431 | Lsi-Chr9:4593972 | 1.72E-63 | dispersed | |
Lsi08g01089 | Lsi-Chr8:19491710 | Lsi03g01989 | Lsi-Chr3:31267990 | 3.58E-62 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01089 | K09873 | - | csv:101205380 | 386.341 |