Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01092 ATGGTTTTGGCGATCAAGGTTTCTTTTCTTCTTCTCCTTACATTATTTGCCTCATTCGCCAACTATGGATTTTCGCTTTACGAAGATCAGGTTGGACTCATGGATTGGCGTCAGCAATACTTGGGAAAAGTGAAACACGCGTTGTTCCATTCTTCAAAATCAGGGCGAAAGCGTGTAGTAGTATCCACAGAAGAGAATGTAATTGCATCACTTGATCTTCGGCATGGCGAGATTTTTTGGAGACATGTCCTTGGCCCTAATGATTCCATTGATGGAATTGAGTTCGTTCTTGGAAAATATGTTGTTTCTCTTTCATCGGAGGGGAATTTTTTAAGAGCATGGAACCTTCCTGATGGCCAGATGGTGTGGGAGTCTTTTCTTCAGGGCACCAATCCATCAAAGTCACTTCTATTGGTTCCGAAAAGTTTGAAAGCCAACCAGGAGACTATGATTCTAGTTTTTAGCAGAAGTTATCTGCATGCTGTCTCCTCCCTAGACGGTGAGGTTATTTGGAAGATTGACTTAACAGAGAACAGTGTAGAAATTCAAAAAATCATTCAGCTTCACGACAGTGATATCATTTATGCTGTGGGATTTTCAAGTCCAACCCAACTTGATCTGTTTCAAATAAATGTTAAGAGTGGAGAGTTGCTGATGCACCAGACGGCAACATTTTCTGCTGGCTTTTCTGGAGAATTAGTATCAGTTTCTGATGATGTGCTTGTGACCTTGGACACTGCTAGGTCAAATCTTGTTATAATAAACCTTATGAATGGTGAAATTAGGATTCTACAGTCACCTATTGTGTCTCTCATTGATGAAATTTCTGGGTCAATGGAAATAGTGCCTTCAAAGCTTTCAGGGTTAATTGCTGTTAAAGTTAATTCTCTTTTAACATTAGTTCGAGTAAACGGTGAAGGTGAGGTGAAGGTGGTGGATAAAATTACCGGTCAGGCAACTGTAAGTGATGATCTCTTAGTTTCAGAGAGTCAGCATGCAGCTGCTTTAGCTCATCATGAGGGAAGTTATGTGCATCTAACTGTCAAGCTTATTGATGACTGGAGCAGTAATTTTATCGACGAAAATATAGTAATCGATAACCAGAGAGGATCTGTACAGAAGGTTTTTTTAAACTCCTACATTCGGACGGATAGGTCTCATGGTTTCAGGGCTCTGCTTGTCATGGAAGACCATTCACTGTTGTTAGTACAACAAGGTGAAATTGTGTGGAGTAGGGAAGATGGCCTTGCCTCTATTGTAAATGTTGTGACATCTGAACTGCCTGTTGAAAAAAAAGGCGTTTCTATAGCAAAGGTGGAGAACAATCTCATTGAATGGCTACAGGGACATCTGCTGAAACTCAAGGGAACTTTAATGATTGCAAGCCCTGAGGATGTGGTAGCCATTCAAAATATGAGGTTAAAGAGTTCTGACAAAAGCAAAATGAGTAGGGACCACAATGGATTCAGGAAACTGCTGATTGTTCTAACTAAATCAGGAAAACTCTTTGCTTTGCACTCTGGAGACGGCCGTGTCGTATGGTCTCGATTACTGCAACCTTTCCATAAATCAGAAGCTTGTTCTCCAAGATGGCTCAATATTTATCAATGGCAAGATCCCCACCATCGTGCCATGGATGAGAATCCATCTGTACTTGTTGTAGGCCGTTGTGGACAAAGTATGGATGGACCAGGTTTGCTTTCATTTGTTGATACTTACACGGGAAGGGAGATTAGTTCATCAAGCCAGATTCACTCGGTTGTGAAAGTTATTCCACTTCCATTTACTGATTCAACAGAACAACGCCTCCATATTTTAATAGATGCTGAGAGTCGTGCTCATTTGTATCCACAAACTTCTGAAGCTATTGGTATTCTGCAATCAGAATTTTCAAACATATACTGGTATTCAGTTGAGGCTGACAGTGGCATCATTAAAGGGCACGCGTTAAAGAGAAACTGTGTTGATGTAGTGAACGACTACTGCTTTGAGAGCAAGGATGTATGGTTAATTATGCTTCCATCGGAGTCTGAGAAAATCATTGCAACTGCTACAAGAAAATTGAATGAGGTGGTACATACGCAAGCAAAGGTTGTAGCAGACCAAGATGTGATGTATAAATATATATCAAAAAATCTGCTCTTCTTGGCCACCGTTGCACCAAAAAGCAGTGGTGAAATTGGAACTACAACCCCAGAGGATTCCTGGTTGGTTGTATATCTTATTGATATTGTAAATGGTCGTATATTGCATCGAATGACTCATCATGGTTCAACAGGTCCAGTCCATGCTGTTTTTAGTGAGAACTGGGTTGTTTATCACTACTTCAATCTTAAAGCACACAGATATGAGATGTCAGTTGTTGAAATTTATGATCAATCTCGTGCGGACAATATAGATGTATGGAAGCTTATTATTGGAAAGCATAACCTGACTTCACCAATTACTTCATATTCTCGACCTGAAATTTTGGCTAAATCCCAATCCTACTTTTTCACTCATTCTGTGAAAGAAATATCAGTTACCTCAACATCTAAGGGTATAACATCAAAACAGCTTCTGATTGGTACAATAAACGATCAGATTTTGGCTCTTGACAAACGTTACCTGGATCCTCGACGATCTATCAATCCCTCACAAGCTGAGAGAGAAGAAGGCGTTATACCTCTTACTGATTCCTTGCCTATCATTCCTCAGACCTATGCAACACATGCGCTTCAAGTCGAAGGTCTTCGAGGCATCGTGACTATACCAGCCAAGTTGGAGTCAACAACTCTTGCATTCGCTTACGGAGTTGATCTCTTCTTTACCAGGATTACACCCTCAAGGACGTATGATTCACTAACCGAAGATTTCAGCTACGCGCTACTTCTCATAACCATTGTTGCTCTTGTGATAGCCATAATTGCAACATGGGTTTTATCTGAGAGGAAAGAGCTACAAGATAAGTGGAAGTGA 2958 40.57 MVLAIKVSFLLLLTLFASFANYGFSLYEDQVGLMDWRQQYLGKVKHALFHSSKSGRKRVVVSTEENVIASLDLRHGEIFWRHVLGPNDSIDGIEFVLGKYVVSLSSEGNFLRAWNLPDGQMVWESFLQGTNPSKSLLLVPKSLKANQETMILVFSRSYLHAVSSLDGEVIWKIDLTENSVEIQKIIQLHDSDIIYAVGFSSPTQLDLFQINVKSGELLMHQTATFSAGFSGELVSVSDDVLVTLDTARSNLVIINLMNGEIRILQSPIVSLIDEISGSMEIVPSKLSGLIAVKVNSLLTLVRVNGEGEVKVVDKITGQATVSDDLLVSESQHAAALAHHEGSYVHLTVKLIDDWSSNFIDENIVIDNQRGSVQKVFLNSYIRTDRSHGFRALLVMEDHSLLLVQQGEIVWSREDGLASIVNVVTSELPVEKKGVSIAKVENNLIEWLQGHLLKLKGTLMIASPEDVVAIQNMRLKSSDKSKMSRDHNGFRKLLIVLTKSGKLFALHSGDGRVVWSRLLQPFHKSEACSPRWLNIYQWQDPHHRAMDENPSVLVVGRCGQSMDGPGLLSFVDTYTGREISSSSQIHSVVKVIPLPFTDSTEQRLHILIDAESRAHLYPQTSEAIGILQSEFSNIYWYSVEADSGIIKGHALKRNCVDVVNDYCFESKDVWLIMLPSESEKIIATATRKLNEVVHTQAKVVADQDVMYKYISKNLLFLATVAPKSSGEIGTTTPEDSWLVVYLIDIVNGRILHRMTHHGSTGPVHAVFSENWVVYHYFNLKAHRYEMSVVEIYDQSRADNIDVWKLIIGKHNLTSPITSYSRPEILAKSQSYFFTHSVKEISVTSTSKGITSKQLLIGTINDQILALDKRYLDPRRSINPSQAEREEGVIPLTDSLPIIPQTYATHALQVEGLRGIVTIPAKLESTTLAFAYGVDLFFTRITPSRTYDSLTEDFSYALLLITIVALVIAIIATWVLSERKELQDKWK 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19521696 19529348 + Lsi08G010920.1 Lsi08g01092 669018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01092 985 Gene3D - 26 347 IPR015943 GO:0005515
Lsi08g01092 985 Pfam PQQ-like domain 53 261 IPR002372 -
Lsi08g01092 985 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 418 IPR011047 -
Lsi08g01092 985 PANTHER UNCHARACTERIZED 10 985 IPR026895 GO:0072546
Lsi08g01092 985 Pfam ER membrane protein complex subunit 1, C-terminal 767 984 IPR011678 -
Lsi08g01092 985 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 491 868 IPR011047 -
Lsi08g01092 985 SMART ire1_9 486 517 IPR018391 -
Lsi08g01092 985 SMART ire1_9 142 174 IPR018391 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01092 K23562 EMC1; ER membrane protein complex subunit 1 - csv:101205138 1786.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g311 Blo01g01772 Blo12g00758 . Bda03g00429 . Bpe02g00172 Bma04g00404 Bma01g02553 . Cmo12g00212 . . . Car12g00242 Sed01g1273 Cpe07g00221 . Bhi04g00834 Tan02g2572 Cmetu03g1902 . Hepe10g0351 . Lcy13g1396 . . . . . . . . . Cone17ag1117 Cone20ag0604 . . . Cme03g01734 . . . . . Bpe04g00395 . . . . . . Cma12g00258 . . . . . . . . . . . Cla08g01229 Cam08g1688 Cec08g1267 Cco08g1388 Clacu08g1386 . Cre08g1171 Lsi08g01092 . Chy03g01240 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006904 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01092 Lsi_Chr08 FPKM 66.151909 69.885292 83.537834 86.418678 82.186272 63.344074 88.605278 86.051559 85.860756 104.685669