Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01094 ATGTACGGACCGTCAGAGACTCCTTTTGAAGGTGGTGTTTTTCAACTTGCCTTCTCCGTACCTGAGCAATACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGTGGTTGAATGGAACCACACTTTATACTTATCGCTGTGCCTTCGTGCAGACGGGTGAGATCTGCCTAGATATATTGAAGAATGCGTGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCTGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAACCTCCTGCGTTCGGGCGACGTCCGAGGATATCAATCAATGGCAAGGATGTACACAAGGCTTGCTGCCATGCCCAAAAAGGGCTGA 402 47.01 MYGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKWLNGTTLYTYRCAFVQTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19545344 19550820 - Lsi08G010940.1 Lsi08g01094 669020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01094 133 SMART ubc_7 1 129 - -
Lsi08g01094 133 SUPERFAMILY UBC-like 3 129 IPR016135 -
Lsi08g01094 133 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 129 IPR000608 -
Lsi08g01094 133 Gene3D Ubiquitin Conjugating Enzyme 1 128 IPR016135 -
Lsi08g01094 133 CDD UBCc 3 124 IPR000608 -
Lsi08g01094 133 Pfam Ubiquitin-conjugating enzyme 59 123 IPR000608 -
Lsi08g01094 133 Pfam Ubiquitin-conjugating enzyme 2 43 IPR000608 -
Lsi08g01094 133 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 133 - -
Lsi08g01094 133 PANTHER BNAA09G04490D PROTEIN 2 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01094 K10689 PEX4; peroxin-4 [EC:2.3.2.23] - ini:109190965 233.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01094 Lsi-Chr8:19545344 Lsi07g00875 Lsi-Chr7:9944412 7.88E-27 dispersed
Lsi08g01094 Lsi-Chr8:19545344 Lsi05g01167 Lsi-Chr5:19606720 4.18E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011133 1 1 1 0 2 0 2 0 0 1 1 0 1 1 1 2 0 1 2 0 1 1 1 1 1 1 1 5 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01094 Lsi_Chr08 FPKM 32.206898 42.266544 6.697301 6.001993 17.670015 11.309661 11.656533 9.491509 8.152981 13.229856