Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01101 ATGCAGAGTTTGCAAGATAAGGCCTCCGAGTGGAGCGGAGTGAAGCGTGAAGATGCCTTCGCCATCGACGAAGTCAATTTGTTTCAGAAGTTAGGTCTCCAAACGTTCGTTAATCTATCGACCAAATTCTATAACAGGGTGTATGACGACGAGGAGGAGTGGTTCCGATCAATTTTTGGGAATTCGAAGAAAGAGGATGCAATTCAGAATCAGTACGAGTTCTTCGTGCAGAGAATGGGAGGTCATCCAGCTCTTATAGGTCGACATCGACCATTCCCGGTCACGCACAGAGCGGCAGAGAGATGGTTACATCACATGCAACTAGCATTAGACGAAACCCCAGATATAGATGCAGATTCAAAATTTTATGCTTCAAAGAAAAGGAAACCTCTTGCTCTCAGTCTGAAGTCTGGGAGTTACGACAAGGATGGAAAAAAGACACTTGAAGGGTCACCTGGTGCTAAAGGTACGTTGGACAGTTACCTGGTGACCTCGCAGGATCATGGCAACTCTGATAACCCATCACATTCAGTCCGGGAAAACTTGTCTGGGCAAGACCTGGTAAAGAGAAACCTATTGTTGAAAATTAATAGTTCCTCTAGAAATGAACACGAGGAACCCACTTTGTCTAGAGGGTGTGACACTTCTGCAGCAACTGAAGGAATCAAGAAAAGAACTCTGGAGGACTCATACGAGACCAGAAGTTCAACAGTTAAATCCATGGAAGGCGACAGGGGTGTCACACCCTGCACGGAGAAACCAGAGCTTAAACAGTTTGCAGCTGATTTCTTGTCTCTGTACTGCAGCAATGAACTACATACTACTGTTAGTTCGCCAGTAGAGCAAAAAGTGACTTTTCTAAAGCGGCACTCCAGTCCATCTCTACTAGAGGGGGAGGCTAAATCAACGAAGAAGATACATTCTATTGCGGGTCCATCAAATGCCAAAGATGAACCTGATTCCTCAAAGGTATTGAGTGATGGAAACAAGCAGTCCAATTTTGTTGTTGAAACTGGGGATACCGACAGTCATCATCCTGTTGTGCTCAAGGCATGTCTGCAGAAATGCAATAAAGCACCTAGATCACCTTATTGTTTGACTGAATGCAAAACACCGGGCTTGTCAACTGCCAATACATGTTTACGGGAGACTCCTAAGTCTGGAAGCTCGACATTTTCTCCTGGAGAAGCTTTTTGGAAAGAAGCAATCGTGTTTGCAGATGGTTTATGTGCTCCAAGCATTGACCTTACCAATTGTGACGCTGAGGGAGCTAATCTTGTAGAGAGTCAGAGTCATACGAAGAAATTTCCTATACCAGGGGAACCTGCTCAGAAAAGGTTAAAAGGACAGTTTGGTGGAGGTAGTGGTGGAGTCCGGCTTGGGGAACCTGGTGCTTCCATAGGTTCATCGAGGAGTGATTTAAAAGAGTTAAATAGAGAAGTGTCTTCACTGCCTGTTAAGCATTTTGACTTCTCGGCTGATGATAAAAACTTGGATGAAAGTACATCACCTTATTGTGCTTCAAATGAATCTAAAGTTAATGCATATGACCTTAATGAGCAGTCTGATTGTTGTTATACTTTTCATGATAGTCTAACAAAGCATAATGATAAGACCCCTGACAGTGATTCTCTTACAAAAGAGAAGATACATGAAACAAATGTAACTTCCTCTGTTCTGGTAGCGACTGAAGTGAAATTAAACATATTTAGTCCCTCTGATAGTATCACATCTGACACAGCGGTTCATGAACTTAGGGCCTCTACTGTTCATGATTTTAAAGAGGAAACAACACCTTCAAGTTCAGTAAGACATAAAGATTGGCTGGATCTAAGTTGCTGGCTGCCTCCTGAAATTTGCAGCATTTATAAAGAGAAAGGAATAACAAAACTGCATCCTTGGCAGGTTGAATGTCTTAAGGTAGACGGTGTCTTGCAGAGAAGAAATCTTGTTTATTGTGCATCTACCAGTGCTGGAAAAAGTTTTGTTGCAGAGATTTTAATGTTAAGGCGGGCAATTTCTACTGGAAAGATGGCACTTCTTGTACTTCCATATGTATCAATTTGTGCAGAAAAGGCCGCGCATCTTGATGTTCTTCTTGAACCTCTGGATAAGCATGTGCGTAGTTATTATGGAAATCAAGGTGGTGGAACGCTTCCTAAGGATACTTCTGTGGCTGTTTGCACAATTGAGAAGGCAAACTCTTTGATAAACAGATTGTTGGAGGAGGGTCGTTTGTCAGAAATTGGAATTATTGTGATTGATGAATTGCACATGGTTGGAGATCAGACGAGGGGTTATCTTTTGGAACTATTATTGACTAAACTTCGTTATGCTGCTGGTGAAGGTAATTTAGATTCTAGCAGTGGTGAGAGTTCTGGGACTAGCAGTGGTAAGTCAGACCCTGCTCATGGTATTCAAATAGTTGGCATGAGTGCAACCATGCCGAATGTCGCAGCTGTTGCAGATTGGCTTCAGGCAGCCTTGTACCATACTGATTTTCGGCCTGTTCCTTTAGAGGAGTACATTAAAGTTGGGGATACCATTTATAATAAAAGTTTGGACATTGTTAGAACAATTTCAAAAACAGCTAATCTTGGTGGTAGGGATCCAGATCACATTGTAGAATTATGTAATGAGGTAGTTGAAGAGGGTCACTCAGTATTGATCTTTTGCTCCAGTCGGAAAGGATGTGAATCAACAGCAAAACACGTCTCAAAATTCCTCAAGAAGTTTTCTGTAAAAATTCACAACGAGAACAGTGAGTTTACAGACATTTTTTCGGCAATTGACGCACTGCGAAGATGTCCTACTGGACTGGATCCTGTATTAGAGGAAACCTTTCCGTCTGGTGTTGCCTACCATCATGCTGGCCTTACTGTAGAGGAGAGAGAGGTTGTTGAAACTTGCTACCGCAAGGGTCTTTTGCGTGTTTTAACTGCTACATCTACCTTAGCTGCTGGAGTTAACCTGCCAGCTCGAAGGGTCATTTTCCGGCAACCCAGGATTGGGCGAGACTTTATTGATGGTGCAAGGTACAGACAAATGGCTGGTCGGGCTGGCCGGACTGGGATTGATACCAAGGGGGAGAGTGTACTCATTTGCAGACCAGAAGAGATTAAAAGAATTAATGAACTTCTTAACGAGAGCTGTCCACCGTTGCAATCATGTTTGTCTGAAGATAAGAATGGAATGACTCATGCAATATTAGAAGTTGTGGCTGGTGGGATTGTTCAAACTGCCACTGATATTCATCGATATGTAAGGTGTACTCTTCTGAATTCTACAAAACCATTTCAAGATGTGGTTAAATCAGCACAGGAATCTCTTCGCTGGTTATGCCATGGAAAATTTCTTGAATGGAACGAGGATACCAAGTTGTATAGTACCACGCCCCTTGGACGAGCGTCATTTGGAAGCTCTCTTAGTCCAGAAGAATCACTTGTAATCAACCTCTCCTATAACTCCACCACCATTACTCATCGTGAAAGCATGTGTTACGAATCATTTACTATTGTTTTGGATGACCTTTCAAGGGCCCGAGAAGGATTTGTGCTTGCATCTGATTTACATTTGGTGTACCTAGTCACGCCGATCAATGTTGATGTTGAGCCAGATTGGGAGTTATATTATGAACGGTTTATGGGTTTGCCTTCTCTTGACCAGTCTGTTGGAAATCGAGTTGGAGTTACAGAACCATTTTTGATGCGTATGGCACATGGCGCACCAGTTCGACGTGCAAATATCTCAAGAAATGGTGTCGCGGGTTTACGTACCAAGCGTGATGAACATGGGTGCATGTATGATGACAGACCTTCAGAGGAGCAAACTATTCGAGTGTGTAAACGATTTTATGTGGCCCTTATCTTGTCAAGACTTGTTCAGGAAACTCCCATTCCTGAAGTTTGTGAAGCTTTTAAAGTTGCCAGAGGGATGGTTCAAGCATTACAAGAGAGTGCCGGAAGGTTTGCATCTATGGTCTCCGTATTTTGTGAGAGGCTTGGATGGCACGATCTGGAAGGTCTGGTAGCCAAGTTCCAAAATCGTGTTTCATTTGGAGTTAGAGCTGAGATTGTAGAACTTACTACTATTCCATACGTCAAGGGTTCTCGAGCCAGAGCACTCTATAAAGCTGGTTTGCGGACACCTTTAGCAATTGCAGAAGCCTCTGATGCTGAATTAGTTAAAGCTCTTTTTGAGTCTGCATCATGGACTGGAGAAGGTGAGCTTAACAAGACACGATTATTTGTTTGTGCTGATTCTGTGGCTACTGTTATAATCGTAGTTGTCTTCCTCCAGTTTCAAAATTCTAATATTGAGGTTGATTGCATAGAGAGTACAGCACAAAAACGGATGCATGTTGGAATAGCTAGGAAGATTAAGCATGGTGCTCGTAAAGTTGTTCTTGATAAAGCTGAAGAGGCAAGGATTGCTGCATTCTCAGCTTTTAAATCATTGGGGTTTATTGTGCCACAAATTTCTCGTCCCTTGTCAGCAAGTGCAGATGGAAATATAACAGCACAAGTGGCTGCAAGTATTCCTTCTGAAATCGATACTTTAAACAGAGTTGTTAGCACACGACAAGTGGAGCATGTTTTAACAAAGTCATGTTTTGGAGGACCTTCCAGTTCTGAAAAAGTAGGTGCTAAGAACCTGAGTGAAACAGGAGCAATTTCTGTTGAAGTAAAACGGCCCAATTCTGGTGTTAATCCTCTGGTGAATGTTGAAGGGTCTGCAATCCAGGAGTCAAATACTGTTGTTGAATGTGCGGGAAAGGTAGATGTTGCAATCTCTAATCACGTGGAAAAAATTACTGATGAAAGGGAACAACATAGTAGTAAAGTTTTGCATCCTCCGAAAAGAGACGGTTCTTCCATGAAGGGTCCTATCCATGCAGCTAGTACATCTGGCGGATTTGAATCTTTCTTGGATTTGTGGGATGCTAGCCAGGAATTTTATTTTGATCTCTATTACACCAAACGATCTGAAGTGAACTCTGTTGTCCCCTTTGAATTACATGGAATAGCCATCTGTTGGGAAAATTCTCCGGTGTATTATGTGAACCTCCCAAAGGATTTGTTGGGGCCCAAGAGTGGAAAAGGTCTTTATCCAGATGACAGCACGTCTGGTGACCAGGTTCAGGTACTTAAATGTCCGGGAGTTTCCATCCAGAAATTGGGTTTCCTGAATTCTGCTCGACGTAATATGGGTCTTAAACTTGTAGACGGTTCATACTTAGTGTTGTCCAGAGTTCACATAAGCAATGTAATTGATATGTGCATTGTAGCTTGGATTCTTTGGCCAGATGATGAGAGAAATTCAACCCCGAACCTGGAGAAGGAAGTCAAGAAAAGATTATCTGGTGAAGCTGCTGCTGCTGCTAACCGGAGTGGCCAGTGGAAGAATCAGATGAGAAGAGTAGCCCACAATTGTTGCTGTCGGCGTGTTGCACAGACACGAGCTCTATGTTCTGTTCTCTGGAAGCTAATAATTTCTGAAAAGCTCTTGGAAGCTCTCAACAATATAGAGATTCCATTGGTAAGTATTCTTGCTGATATGGAAACCTGGGGTATAGGTGTTGACATGGAGGGATGCATTCAGGCCCGCAATTTACTGGGAAAAAAACTCAGGTGCCTTGAGAAGGAAGCTTATAGGCTAGCTGGCATGACCTTCTCCCTGTTCGCAGCGGCAGATATTGCTAATGTTCTATATGGACATTTGAAGCTCTCTATTCCAGAGGGGTTCAATAAAGGCAAACAACATCCAAGCACTGATAAACATTGTTTGGACTTGCTGAGGAATGAACACCCTATTGTTCCTGTCATTAAAGAGCACCGGACATTGGCGAAGCTCTTTAACTGTACTTTGGGATCCATTTGCTCGTTAGCTAAGCTATCTGCAAGGACACAGAAATACACGCTACATGGTCATTGGCTCCAAACATCTACAGCAACTGGTCGGCTTTCCATGGAGGAGCCTAACCTTCAGTGCGTTGAGCATGCGGTAGATTTCAAAATGAATGAAGATGATGTTGATCATTGTAAAATTAATGCTCGTGATTTTTTCATCTCTACTCAGGAAAATTGGCTGCTCTTATCGGCAGATTATTCTCAGATAGAGTTGCGGCTGATGGCACATTTTTCAAAAGACTCCTCACTGATTCAACTCCTCAGTAAACCTCATGGGGATGTGTTTACTATGATTGCTGCTAGATGGACAGGGAAGACGGAAGACTCTATTGGATCTCATGAGCGAGATCAAACCAAAAGGTTGGTATATGGAATCCTTTATGGAATGGGCGCCAAAACACTTGCATTACAACTGGAATGTAGTAAAGATGAGGCTGTAGAGAAAATTCAAAGTTTCAAGAGTTCTTTCCCTGGCGTGGCTTCATGGCTTCATGAGGCGGTCACATTTTGCCGTCAGAAGGGGTATGTTGAAACTCTTAAAGGAAGAAGGCGTTTCTTGTCAAAAATTAATTCCCCAAATAGCAAAGAAAAATCAAAAGCACAGCGACAAGCTGTGAATTCAATTTGTCAGGGTTCAGCGGCTGACATAATTAAAGTGGCTATGATCAACATTTACTCCGTCATTGGAACGGATGCCCCAGATCCTACAGAGTTACCTGCAGCTAACTCTAATATATTGAGGGGCCACTGCCGAATTGTATTACAGGTGCATGATGAGTTAGTGCTAGAAGTGGACCCTTCCGTCGTCAAGGAGGCAGCAGCTTTATTACAGAAGAGCATGGAAAATGCTGCCTCCCTTCTGGTTTCTTCAGCAGAATGCTTGGGTGGAAGCAAAACAGAGAACCTGGTCTCAAGAATGGAAAAAGCTGATGAAACAGTGCTTGGCATTATTCTGAGACCTTTTATCGGATACTTCAATTGTCGAGTTGTCACCTCTCATCTCTCTTCTGCTGCTGTTTCCTTCCTGGAGTCATCTTTCAGCATATGCTTGTTGCAACAATTCCTAAGCAGAGTTACTCGAGTTGATTGCGAATTGAGGGAAGAAGACGCATCATTCCTACTATCTTCTAATGATATTTTGCCTTTTGACTGTATTGGTAATATTCTCCCCCACACAGCAGTATGGACTATGCATAGAAATGTTTCGAGATCCTGCAAACAACATACTCAGAGAAGTTATACGAGTGACATCTTAGCGGGAGAAAGAATCCCAAGGTGGCATACTTATTAA 7200 42.75 MQSLQDKASEWSGVKREDAFAIDEVNLFQKLGLQTFVNLSTKFYNRVYDDEEEWFRSIFGNSKKEDAIQNQYEFFVQRMGGHPALIGRHRPFPVTHRAAERWLHHMQLALDETPDIDADSKFYASKKRKPLALSLKSGSYDKDGKKTLEGSPGAKGTLDSYLVTSQDHGNSDNPSHSVRENLSGQDLVKRNLLLKINSSSRNEHEEPTLSRGCDTSAATEGIKKRTLEDSYETRSSTVKSMEGDRGVTPCTEKPELKQFAADFLSLYCSNELHTTVSSPVEQKVTFLKRHSSPSLLEGEAKSTKKIHSIAGPSNAKDEPDSSKVLSDGNKQSNFVVETGDTDSHHPVVLKACLQKCNKAPRSPYCLTECKTPGLSTANTCLRETPKSGSSTFSPGEAFWKEAIVFADGLCAPSIDLTNCDAEGANLVESQSHTKKFPIPGEPAQKRLKGQFGGGSGGVRLGEPGASIGSSRSDLKELNREVSSLPVKHFDFSADDKNLDESTSPYCASNESKVNAYDLNEQSDCCYTFHDSLTKHNDKTPDSDSLTKEKIHETNVTSSVLVATEVKLNIFSPSDSITSDTAVHELRASTVHDFKEETTPSSSVRHKDWLDLSCWLPPEICSIYKEKGITKLHPWQVECLKVDGVLQRRNLVYCASTSAGKSFVAEILMLRRAISTGKMALLVLPYVSICAEKAAHLDVLLEPLDKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVIDELHMVGDQTRGYLLELLLTKLRYAAGEGNLDSSSGESSGTSSGKSDPAHGIQIVGMSATMPNVAAVADWLQAALYHTDFRPVPLEEYIKVGDTIYNKSLDIVRTISKTANLGGRDPDHIVELCNEVVEEGHSVLIFCSSRKGCESTAKHVSKFLKKFSVKIHNENSEFTDIFSAIDALRRCPTGLDPVLEETFPSGVAYHHAGLTVEEREVVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGARYRQMAGRAGRTGIDTKGESVLICRPEEIKRINELLNESCPPLQSCLSEDKNGMTHAILEVVAGGIVQTATDIHRYVRCTLLNSTKPFQDVVKSAQESLRWLCHGKFLEWNEDTKLYSTTPLGRASFGSSLSPEESLVINLSYNSTTITHRESMCYESFTIVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFMGLPSLDQSVGNRVGVTEPFLMRMAHGAPVRRANISRNGVAGLRTKRDEHGCMYDDRPSEEQTIRVCKRFYVALILSRLVQETPIPEVCEAFKVARGMVQALQESAGRFASMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASDAELVKALFESASWTGEGELNKTRLFVCADSVATVIIVVVFLQFQNSNIEVDCIESTAQKRMHVGIARKIKHGARKVVLDKAEEARIAAFSAFKSLGFIVPQISRPLSASADGNITAQVAASIPSEIDTLNRVVSTRQVEHVLTKSCFGGPSSSEKVGAKNLSETGAISVEVKRPNSGVNPLVNVEGSAIQESNTVVECAGKVDVAISNHVEKITDEREQHSSKVLHPPKRDGSSMKGPIHAASTSGGFESFLDLWDASQEFYFDLYYTKRSEVNSVVPFELHGIAICWENSPVYYVNLPKDLLGPKSGKGLYPDDSTSGDQVQVLKCPGVSIQKLGFLNSARRNMGLKLVDGSYLVLSRVHISNVIDMCIVAWILWPDDERNSTPNLEKEVKKRLSGEAAAAANRSGQWKNQMRRVAHNCCCRRVAQTRALCSVLWKLIISEKLLEALNNIEIPLVSILADMETWGIGVDMEGCIQARNLLGKKLRCLEKEAYRLAGMTFSLFAAADIANVLYGHLKLSIPEGFNKGKQHPSTDKHCLDLLRNEHPIVPVIKEHRTLAKLFNCTLGSICSLAKLSARTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVDFKMNEDDVDHCKINARDFFISTQENWLLLSADYSQIELRLMAHFSKDSSLIQLLSKPHGDVFTMIAARWTGKTEDSIGSHERDQTKRLVYGILYGMGAKTLALQLECSKDEAVEKIQSFKSSFPGVASWLHEAVTFCRQKGYVETLKGRRRFLSKINSPNSKEKSKAQRQAVNSICQGSAADIIKVAMINIYSVIGTDAPDPTELPAANSNILRGHCRIVLQVHDELVLEVDPSVVKEAAALLQKSMENAASLLVSSAECLGGSKTENLVSRMEKADETVLGIILRPFIGYFNCRVVTSHLSSAAVSFLESSFSICLLQQFLSRVTRVDCELREEDASFLLSSNDILPFDCIGNILPHTAVWTMHRNVSRSCKQHTQRSYTSDILAGERIPRWHTY 2399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19660913 19682732 - Lsi08G011010.1 Lsi08g01101 669027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01101 2399 SMART polaultra3 2015 2238 IPR001098 GO:0003677|GO:0003887|GO:0006260
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 198 249 - -
Lsi08g01101 2399 Pfam Helix-turn-helix domain 1029 1119 IPR046931 -
Lsi08g01101 2399 PANTHER DNA POLYMERASE I 632 1150 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 Gene3D - 1631 1854 IPR036397 GO:0003676
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 290 328 - -
Lsi08g01101 2399 CDD DNA_pol_A_theta 1857 2258 - -
Lsi08g01101 2399 Gene3D - 2039 2183 - -
Lsi08g01101 2399 Pfam DNA polymerase family A 1865 2258 IPR001098 GO:0003677|GO:0003887|GO:0006260
Lsi08g01101 2399 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 833 IPR014001 -
Lsi08g01101 2399 SUPERFAMILY Globin-like 26 133 IPR009050 -
Lsi08g01101 2399 Gene3D - 847 1045 IPR027417 -
Lsi08g01101 2399 PANTHER DNA POLYMERASE THETA 632 1150 - -
Lsi08g01101 2399 PANTHER DNA POLYMERASE I 1160 2258 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 158 184 - -
Lsi08g01101 2399 CDD SF2_C_Ski2 835 1036 - -
Lsi08g01101 2399 Gene3D - 1238 1377 - -
Lsi08g01101 2399 Gene3D Taq DNA Polymerase; Chain T, domain 4 1857 1969 - -
Lsi08g01101 2399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 873 1065 IPR001650 -
Lsi08g01101 2399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 1038 IPR027417 -
Lsi08g01101 2399 PANTHER DNA POLYMERASE THETA 1160 2258 - -
Lsi08g01101 2399 SUPERFAMILY DNA/RNA polymerases 1835 2256 IPR043502 -
Lsi08g01101 2399 CDD DEXHc_POLQ-like 615 836 - -
Lsi08g01101 2399 CDD TrHb2_AtGlb3-like_O 28 121 - -
Lsi08g01101 2399 Pfam Helicase conserved C-terminal domain 872 1024 IPR001650 -
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 139 184 - -
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 1606 1621 - -
Lsi08g01101 2399 SMART ultradead3 627 842 IPR014001 -
Lsi08g01101 2399 Gene3D - 615 836 IPR027417 -
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 785 802 - -
Lsi08g01101 2399 Gene3D - 1983 2258 - -
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 784 803 - -
Lsi08g01101 2399 SUPERFAMILY Sec63 N-terminal domain-like 1266 1393 - -
Lsi08g01101 2399 SMART helicmild6 942 1024 IPR001650 -
Lsi08g01101 2399 Gene3D Globins 1 135 IPR012292 GO:0019825|GO:0020037
Lsi08g01101 2399 Pfam DEAD/DEAH box helicase 644 817 IPR011545 GO:0003676|GO:0005524
Lsi08g01101 2399 Pfam Bacterial-like globin 26 119 IPR001486 GO:0019825
Lsi08g01101 2399 MobiDBLite consensus disorder prediction 1606 1630 - -
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 1974 1996 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 2085 2110 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 2030 2053 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 2122 2133 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 2176 2192 IPR002298 GO:0003887|GO:0006261
Lsi08g01101 2399 PRINTS DNA-polymerase family A (pol I) signature 2144 2155 IPR002298 GO:0003887|GO:0006261
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01101 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7] - csv:101215433 3679.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00613 Lsi-Chr5:7564469 Lsi08g01101 Lsi-Chr8:19660913 1.64E-18 dispersed
Lsi05g01406 Lsi-Chr5:21951556 Lsi08g01101 Lsi-Chr8:19660913 2.22E-17 dispersed
Lsi08g01101 Lsi-Chr8:19660913 Lsi11g00814 Lsi-Chr11:10035939 9.97E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007306 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01101 Lsi_Chr08 FPKM 0.693501 0.0 0.519901 0.248452 0.469004 0.369459 0.234084 3.784546 3.914271 3.56597