Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01109 ATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAGTTCCTCAAAAAAGCCGCCATCATCTCTCCCGACGACGCTATCGACCCCGACGACGACGACGTTTTCAAAATCGAACAACAACATCAAATCACTAGAAGCCCTAAAAGAGGCAAAAACTTTCAGGATTCCGCCGATGCCACATGCTTCTTCGGCGATATCGATTTCAGCTATTTCCTCGTAAAAAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTATGGTCACAGAATCTCACTCCTAAGCATTCAAGCTTTTCAGCCACTATAGATTCCCAATCTTCTATTGTGAGCAGCCCAACATCGGCCAGTAATTTGATGGGCAGAGAGCACCAAAGAGGTAACAACAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAATAGGGACTCTGCTAGAAGATCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGTTTGTGCCTGCAACGACCGACGTTGATCAACCGAGATTAACCGCTAAACAAGGCTTTAAGATATTACTTGTGTTTGTTGTTTTAATTGGTCTTTTTTTCTCTCAGCTTGAATCAGTTGTTGCAGAGTCATTTGAGCACGCCACAACCACTAACGGCACTCCGACGAATGTCGAATGTTGCATTGCCGCTCGGTTTACATGGAGACGAAGTTTCTTATTCAGGTGTAACGATGTCAGGGCAGAACCCGACCGCGGGGCTCCCGAACTCAGATATGCATATGAAAACAGGAATGGGTAG 873 45.82 MKRSASELALEEFLKKAAIISPDDAIDPDDDDVFKIEQQHQITRSPKRGKNFQDSADATCFFGDIDFSYFLVKNNREIMDAIVNCGGGLAEAPLWSQNLTPKHSSFSATIDSQSSIVSSPTSASNLMGREHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRRRKQAHLAELENQFVPATTDVDQPRLTAKQGFKILLVFVVLIGLFFSQLESVVAESFEHATTTNGTPTNVECCIAARFTWRRSFLFRCNDVRAEPDRGAPELRYAYENRNG 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19730893 19735388 - Lsi08G011090.1 Lsi08g01109 669035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01109 290 Gene3D - 162 208 - -
Lsi08g01109 290 MobiDBLite consensus disorder prediction 106 155 - -
Lsi08g01109 290 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Lsi08g01109 290 PANTHER BASIC LEUCINE ZIPPER 9 1 192 - -
Lsi08g01109 290 Coils Coil 172 192 - -
Lsi08g01109 290 SMART brlzneu 159 234 IPR004827 GO:0003700|GO:0006355
Lsi08g01109 290 MobiDBLite consensus disorder prediction 106 141 - -
Lsi08g01109 290 SUPERFAMILY Leucine zipper domain 162 202 IPR046347 GO:0003700|GO:0006355
Lsi08g01109 290 PANTHER BASIC LEUCINE ZIPPER 63 1 192 - -
Lsi08g01109 290 Pfam bZIP transcription factor 161 192 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01109 K25784 BZIP9_10_25_63; bZIP transcription factor 9/10/25/63 - csv:101210908 296.589
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01109 Lsi-Chr8:19730893 Lsi03g00198 Lsi-Chr3:2596363 2.26E-06 dispersed
Lsi08g01109 Lsi-Chr8:19730893 Lsi11g00450 Lsi-Chr11:4699823 2.16E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25793 PF00170 bZIP_1 3.00E-09 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01109 Lsi_Chr08 FPKM 2.506604 2.905619 2.269533 2.126456 5.497508 5.614149 4.941993 0.0 0.0 0.0