Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01114 ATGATTGGATTTTGTGTTCTGTTTTGCCACAATTTCAATACCATTTCCTCCGATATCAATTCAATCATGGTTCTTTGGGTTTTTGGCTATGGATCTCTTGTGTGGAATCCAGGATTCGATTTCGATGAGAAAGTGATAGGTTTCATTAGAGATTATAGGCGTGTATTTGATCTTGCTTGTATTGATCATAGAGGTACACCTGAAAACCCCGCAAGAACTCTCACGCTAGAACCCAAAGAAGGATCAATTTGCTGGGGTGCTGCATTTTGCATCCGTGGAGGTCCTGAAAGAGAGAGAGCGGCCATGGAGTATCTTGAGAGGAGAGAGTGCGAGTATGACCAAAAGACTATTATGAACTTCTACGAGGATGAAGATTCCTTGGAACCCACATTGACAGGAGTAGTAGTTTTCACATCTACATTTGATAAAGTGCTAAACAAATACTATCTAGGACCTGCTCCTTTGGAGCAAAAGGCTAGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAACAGAGACTATCTATTCCGACTAGAGAAGGCCTTGTTCGATATCGGCCACGAAGACGATATGGTGATCGAGCTTGCAAACGAAGTGAGGAATATCCTTGGGAAAGTTGGGAAGGGGGTGATTTTGAAGGAGAAGAAGAAGGCGATTGGACCGACGACTCACCTGCCGTTCATGTGCATCCGCTGGCAGAAGCCACCGCTGTGGCCATGGATTCTTAAGCTAACTCGAGCTAAGAAGACGAGGCGTTTGGATTTTAATTGCCACCTTCTGCACTCTCCCATTAAAGCTTTCTCTGATTCATTTATGATTCTCACCGCCATGGATCTCAACATGGATCTAAATGCTCCTCACTCCATGGGTACCACCATCATCGGCGTCACATACGACGGCGGCGTTGTCCTCGGCGCCGATTCTCGTACCAGCACTGGTGTCTATGTGGCTAATCGTGCATCAGACAAGATTACAAAGCTTACTGACAACGTCTATGTTTGTCGGTCTGGCTCGGCTGCAGATTCTCAAATTGTCTCTGATTATGTGCGTCACTTCCTTCACCAGCATACGATACAGCTTGGTCAGCCTGCAACTGTTAAAGTGGCCGCAAACCTTGTTAGGCTATTAGCATATAATAACAAGGATATGTTACAAACTGGCCTTATTGTTGGCGGATGGGATAAGTATGACGGTGGTCGAATCTATGGTATTCCTCTTGGTGGAACAATAATAGAGCAGCCATTTACTATTGGAGGATCTGGCTCCAGTTATTTGTATGGATTTTTTGATCAAGCATGGAGAGAAGGAATGACCAGGGAAGAAGCTGAGCAATTGGTGGTTAAGGCCGTTTCTCTTGCCATTGCCCGAGATGGTGCCAGTGGTGGTGTTGTCCGTACTGTTACTATAAATTCCGAGGGAGTGACAAGAAAATTCTATCCTGGTGATCAGCTACCGCTCTGGCACGAGGAATTAGAGCCTAAAAATTCGTTACTGGATGTGCTGAATGCTTCTAGCCCTGAACCGATGAACATATGA 1539 45.35 MIGFCVLFCHNFNTISSDINSIMVLWVFGYGSLVWNPGFDFDEKVIGFIRDYRRVFDLACIDHRGTPENPARTLTLEPKEGSICWGAAFCIRGGPERERAAMEYLERRECEYDQKTIMNFYEDEDSLEPTLTGVVVFTSTFDKVLNKYYLGPAPLEQKASQIATASGPCGNNRDYLFRLEKALFDIGHEDDMVIELANEVRNILGKVGKGVILKEKKKAIGPTTHLPFMCIRWQKPPLWPWILKLTRAKKTRRLDFNCHLLHSPIKAFSDSFMILTAMDLNMDLNAPHSMGTTIIGVTYDGGVVLGADSRTSTGVYVANRASDKITKLTDNVYVCRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKDMLQTGLIVGGWDKYDGGRIYGIPLGGTIIEQPFTIGGSGSSYLYGFFDQAWREGMTREEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVTRKFYPGDQLPLWHEELEPKNSLLDVLNASSPEPMNI 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19773926 19783414 - Lsi08G011140.1 Lsi08g01114 669040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01114 512 PANTHER PROTEASOME SUBUNIT BETA 284 510 - -
Lsi08g01114 512 PRINTS Proteasome component signature 299 314 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lsi08g01114 512 PRINTS Proteasome component signature 420 431 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lsi08g01114 512 PRINTS Proteasome component signature 431 442 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lsi08g01114 512 PRINTS Proteasome component signature 456 467 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lsi08g01114 512 Gene3D - 22 181 - -
Lsi08g01114 512 Pfam Proteasome subunit 290 470 IPR001353 GO:0005839|GO:0051603
Lsi08g01114 512 CDD proteasome_beta_type_6 292 479 - -
Lsi08g01114 512 ProSiteProfiles Proteasome beta-type subunit profile. 291 470 IPR023333 -
Lsi08g01114 512 Pfam ChaC-like protein 25 202 IPR006840 GO:0003839|GO:0006751
Lsi08g01114 512 ProSitePatterns Proteasome beta-type subunits signature. 295 342 IPR016050 GO:0005839|GO:0051603
Lsi08g01114 512 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 284 510 - -
Lsi08g01114 512 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 292 491 IPR029055 -
Lsi08g01114 512 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 281 488 IPR029055 -
Lsi08g01114 512 CDD GGCT_like 27 117 IPR013024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01114 K02738 PSMB6; 20S proteasome subunit beta 1 [EC:3.4.25.1] - csv:101208696 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00423 Lsi-Chr8:11754962 Lsi08g01114 Lsi-Chr8:19773926 2.94E-22 dispersed
Lsi08g00874 Lsi-Chr8:17101483 Lsi08g01114 Lsi-Chr8:19773926 1.30E-20 dispersed
Lsi08g01114 Lsi-Chr8:19773926 Lsi11g00098 Lsi-Chr11:1041656 2.42E-26 dispersed
Lsi08g01114 Lsi-Chr8:19773926 Lsi04g02210 Lsi-Chr4:29138750 1.79E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g241 . . . . . . . . . . Cma01g01587 . . Car12g00258 Sed03g1518 Cpe07g00236 . Bhi04g01114 Tan02g2598 . . . . Lcy13g1366 . . . . . . . . . . Cone20ag0622 . . . Cme03g01710 . . . . . . . . . Cmo01g01635 . Cma09g00541 . . . . Cpe02g00391 . . . . . . . Cla08g01252 . . . . . Cre08g1191 Lsi08g01114 Csa02g02305 . Cme04g00317
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005086 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01114 Lsi_Chr08 FPKM 16.998718 21.139328 37.097435 37.486771 11.542604 7.889198 11.815186 51.234108 56.607765 53.144821
Lsi08g01114 Lsi_Chr00 FPKM 26.558252 25.582304 27.233473 27.664045 17.72057 15.304095 14.385902 38.911343 42.545143 39.806763