Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01116 ATGGCCAAACCTCGGCTCTTCCTCTTCTTCTTCATCCTCCTCCTCCTCTTCAACCTCCCGCCGCCCACTTCCGCCGCCTCCGCCTCCCCCGCCGCCGAAACTCTCATCCGATTCAAATCCTCTCTCACCAACGCCATCGCATTATCCAACTGGAACTCCTCCGTCCCTCTCTGCTCCGGCGACCGCCGTTACTGGACCGGCCTGATCTGCAAAAACGACCAACTGTACGGCATCCGCCTCGAGAACATGAGCCTCGGCGGCGCCGTTGACGCCGTCGCCTTAGCGGCCCTCCCAACGCTAAGGACTCTGAGTCTAATGAACAATGGGCTTCAAGGCCCAATGCCCGATGTGAAGCAAATTGGAGCGCTTAGGGCTTTGTATCTATCGAATAATAACTTTTCCGGTTCGATTTCTGGAGATGCGTTTGAAGGAATGGGGAATTTGAAGAAACTGTATTTAAGTCGGAATGGATTTTCCGGCGAGATTCCGGCGTCGTTGGGGGAATTGAAAGGGGTGGTGGAATTGGGATTGGAGGAGAATTTGTTTGAAGGAAGAATACCGGATTTCGGGGAAAGGGTTTGGAAGTATTTGAATTTTTCGGGGAATCATTTGGAGGGGCCGATTCCTTCTGGATTGAAGAAGAATACTAATTTCACTTCGTTTCTTGGTAACAACGGCTTATGTGGAGAGCCACTAGCACCATGCAAATCATTCACAAAGAAATGGTCCATTCTCATCGGAGTACTCTCCGCCGCCGCCGCCTTAATCCTCTTTCTCGTTCTCCTCCGCTGTTTTATCCGGCCATCCAAATCCTCCGCCGCCGTACACGACGACACCAAAACCAAAACAAAAACCAAATTGTTCCTCTCTCCGAAAATCCTTTTCAAAAAGCCAGAAAAGACCCACCAATATTCCTCGACCGACTCGGACGACAACTCGAATTTGAGCGGTCCGACCGGGTCGGCTCTGTGCTTCGTGCGAACCGATAGGCCCCGGTTTGACTTTCAAGAACTTCTTGCCGCGTCGGCTGAAGTTCTTGGCAGTGGGAGCTTTGGAAAGTCTTATAAAGCGGTGCTTTCAAATGGGTCGTCGGCGGTGGTGGTGAAGAGATTCCGGCAAATGAATGCCACCGGAAAAGACGAATTTTACAGCCACATGCGGCGGCTTGGACGGCTGTCGCATCCCAATTTATTGCCGCTTGTTGCGTTTTATTATGGGAAAGATGATAAGCTTTTGGTGTCCGACTTTGTTCCCAATGGCAGCTTGGCTAGTCACCTCCATGGGAAAAGAGAAGGAAATGCAAGGCTAAATTGGGGAAAAAGGCTAAAAATCATAAAAGGAGTAGCAAGAGGCCTTTCGCATCTCCACAAAGAACTCCCGAATTTAAGCCTTCCACATGGCCATTTAAAATCTTCCAATGTCCTTCTCGACCAAAATTTCGCTCCACTTTTATCCGATTATGCCCTTTTCCCCCTCCTCCAAAAATCCCACGCCCACCACCACATGGCCGCCTTCAAATCGCCGGAATTCTCCGCCGCCCACCACGACCGTACCTCCAAATCCACCGACGTCTGGAGCCTCGGAATCTTAATCCTCGAAACACTCACCGGAAAATTCCCCACTAACTATCTCCGCCAGGGCAAGGGCGCCGACGACGACCTCGCCGCCTGGGTCGATGCCGTCGTCCGAGAAGAGTGGACCGCGGAGGTCTTCGACAGCGATCTGCTCGGCGGCGGCGGAACTGGAGAGACGGCGGCGGAGGAGGCGGATTGCGGTGATTGGGATTATAATGAAGATATGTTGAAGCTTTTGAAGATTGGGATGTGTTGCTGTGAGTGGGAGATTGGGAAAAGGTGGGGATTGAAACAAGCTGTTGAAAAAATTGAGGAATTGAATTTCAATGATGATGATGAAGAGTATTATTCTTATTATGGGAGTGATTACGATCGAAGTTTCTATTCTAATTCTTCTAATTTCAAAGGAAGAAGAACAAGAACTACTCCCAACGAGGACGAATCTTCCTTTTTGATAATTCACTCTCTGTGGCGCGCGCGGTATTCCAGTTCTCGATTTCGTTTGTTCCCGCCGTCGACATTCACATTTCCGTTTTCCGGCGAGTTGCTCACTTCATCTCTCTGTGGCCGCGGTACACTTCCAACCTATTCTCTAGGTTTCAAGAATGAAGCTCAATGTTGCAATTTAGTTCAGATTATTCAAATATTTGTGTTTGAAGTTCCTGCTGTTAGGGTTGTTCCATGGCTTGGTGGGAAGGCGTTGAGGAAACTCGTATTCTCATTGCTTCTGGTAGATCATGGGGTAAAAGAAAATGTTACTGGATGCTTCCTTTCACTTCGCCATCCAAAATCAGATGGTCGTCTGTATTCTGCCACTCCAGTAGATCCTGTTTTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAAGGAGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGTCTCTTGCAGAGAAGTCAATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTTTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAGCTGAAAAAAACTCTTTGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGATACATTAAGCGATGCAGTTTCAATATTAGGGGAATACATGAAGGATGAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCCGAAGCAACCAGAAAAGCATCGGATTCAGAAAAGCCTCCAAACATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTAGGAGTGGTGCAAAGAATACAAGAAATGGAAAGCAAGCCAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCTATAAAAAGAAAAAGATGA 2988 47.29 MAKPRLFLFFFILLLLFNLPPPTSAASASPAAETLIRFKSSLTNAIALSNWNSSVPLCSGDRRYWTGLICKNDQLYGIRLENMSLGGAVDAVALAALPTLRTLSLMNNGLQGPMPDVKQIGALRALYLSNNNFSGSISGDAFEGMGNLKKLYLSRNGFSGEIPASLGELKGVVELGLEENLFEGRIPDFGERVWKYLNFSGNHLEGPIPSGLKKNTNFTSFLGNNGLCGEPLAPCKSFTKKWSILIGVLSAAAALILFLVLLRCFIRPSKSSAAVHDDTKTKTKTKLFLSPKILFKKPEKTHQYSSTDSDDNSNLSGPTGSALCFVRTDRPRFDFQELLAASAEVLGSGSFGKSYKAVLSNGSSAVVVKRFRQMNATGKDEFYSHMRRLGRLSHPNLLPLVAFYYGKDDKLLVSDFVPNGSLASHLHGKREGNARLNWGKRLKIIKGVARGLSHLHKELPNLSLPHGHLKSSNVLLDQNFAPLLSDYALFPLLQKSHAHHHMAAFKSPEFSAAHHDRTSKSTDVWSLGILILETLTGKFPTNYLRQGKGADDDLAAWVDAVVREEWTAEVFDSDLLGGGGTGETAAEEADCGDWDYNEDMLKLLKIGMCCCEWEIGKRWGLKQAVEKIEELNFNDDDEEYYSYYGSDYDRSFYSNSSNFKGRRTRTTPNEDESSFLIIHSLWRARYSSSRFRLFPPSTFTFPFSGELLTSSLCGRGTLPTYSLGFKNEAQCCNLVQIIQIFVFEVPAVRVVPWLGGKALRKLVFSLLLVDHGVKENVTGCFLSLRHPKSDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSLAEKSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKDTLSDAVSILGEYMKDEPWLKLLCDHLKLNFAEATRKASDSEKPPNIENNFDSISQDKSRSGAKNTRNGKQAKKPKVETESRNIKDMFSKAIKRKR 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19798175 19811107 + Lsi08G011160.1 Lsi08g01116 669042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01116 995 MobiDBLite consensus disorder prediction 937 995 - -
Lsi08g01116 995 Gene3D Transferase(Phosphotransferase) domain 1 417 642 - -
Lsi08g01116 995 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 803 890 IPR019024 -
Lsi08g01116 995 Gene3D - 799 927 - -
Lsi08g01116 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 641 - -
Lsi08g01116 995 CDD RNase_H2-B 789 904 IPR040456 GO:0032299
Lsi08g01116 995 ProSiteProfiles Protein kinase domain profile. 340 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01116 995 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
Lsi08g01116 995 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Lsi08g01116 995 PANTHER LRR RECEPTOR-LIKE KINASE 27 641 - -
Lsi08g01116 995 MobiDBLite consensus disorder prediction 970 987 - -
Lsi08g01116 995 SUPERFAMILY L domain-like 49 230 - -
Lsi08g01116 995 Pfam Leucine rich repeat 123 181 IPR001611 GO:0005515
Lsi08g01116 995 MobiDBLite consensus disorder prediction 943 967 - -
Lsi08g01116 995 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lsi08g01116 995 Gene3D Ribonuclease Inhibitor 140 247 IPR032675 -
Lsi08g01116 995 Pfam Protein kinase domain 343 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01116 995 SUPERFAMILY Protein kinase-like (PK-like) 344 639 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01116 - - - bhj:120076564 1120.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01255 Lsi-Chr6:23134337 Lsi08g01116 Lsi-Chr8:19798175 9.86E-170 dispersed
Lsi07g00684 Lsi-Chr7:7353164 Lsi08g01116 Lsi-Chr8:19798175 4.20E-99 dispersed
Lsi08g01116 Lsi-Chr8:19798175 Lsi11g00148 Lsi-Chr11:1652207 6.74E-118 dispersed
Lsi04g02208 Lsi-Chr4:29120184 Lsi08g01116 Lsi-Chr8:19798175 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012527 0 1 0 0 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 0 1 0 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83854 PF00069 Pkinase 4.40E-27 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01116 Lsi_Chr08 FPKM 30.416666 32.896439 8.987565 9.030407 0.993916 0.888063 0.710123 15.706106 16.402557 17.289759