Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01117 ATGGTTCTAATGGCAGGGCCTGATTACCAAGCCAATCAAGACAAGGATGGTTTTCTGCAGATTTTGGCAGCTCAAGGGGTTGAGTTCCTTCTCTCTGGTGAAGAAAAGGTATCCCCAATATTATGTGCAGGGAAGATTATTTGCCTATTCTTTTCTGCAAACTGGTGTAGACCTTGCAGGACTTTTACTCCACAGTTGGTTCAACTCTACAACACTTTGCAAAAGAGAGGTGAAAAGCTAGAGATTATCTTCATCTCTTTGGACCATGATAAGAATGAATTTGAACAATACTTCAAGACTATGCCATGGCTCACTGTGCCGTTCGATGCCGAGCTGCAGAAACAATTGTGCAGCGAGTACCATGTCGATTGCATTCCGTCCTTCATTCCGCTTTGCGCAGATCAGATTTTGAAAGAAGATGACTTGATTGGCTTTATTGAAGACTATGGTTCTGAAGTATTTCCTTTTACAAGGAAGAGGATGCAGGAACTTAAGGCAATGGATTGTGCCAAACGTGTAGAAGGAAAACTTGAAGAACTCTTGGGGAACAGAGGATATAACCATGTTATTTCAAGACATGGAGGCAAGGTACCGTTTAAATTTCATTTTGGTCCTTATACACAAATATCTCAGCTAATTGGCAAGACAATAGGCCTTTATTTTGGTGCATATTGGAGCCCTCCAAGTCGTTCCTTCATAACAAAACTTTCTAAAGTATACAAGGAAATCATGGACAAAACACACAATCATCACTCCTTAGAAGTAATCTTCGTCTCCACAGACCGAAACCTCGATGAATTCAAACTCAACTTAACAGACATGCCATGGCTCGCAATCCCTTACGAGGACAAGACCCGGCAAGACCTCTACAGAATCTTCGACGTGAAGGCAATCCCGACACTAGTTCTGATCGGGGCGAATGGAAAGACGTCGAGTGAGAATGGAAGAGGCTTGGTTTCCTTGTATGGAGCAGAGGCATTCCCATTTACAGAAGAAAGAATAGATGAATTGGAAGCAGCAGTGAAAAAGGAAGCAGAGGAATTGCCTTCAAATGTGGAGGATATAAAGCATGAGCATGTGCTTAAATTGGAGTTGGCTAAAGCTTATGTTTGTGATTTTTGCAAAAGACAAGGAAGGTTTTGGGCATTTTCTTGTCATGTTTGTGATTATGATCTTCATCCAAGTTGTGTTCAGATGAGAAATGAAGAGAAATCAAGGGAAATGTGGAATCAGAAGCAATCAATTGCTAAGGAAAGGAAAGAGCTGGCCACAGGCAATCAATTGGTGGGAATCGCCATTGACAAGGATAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTACTTGGAAAGGGCCAAACTGCCATTCTCATCCATGTTAAACTCAGATCTTCTTCCTATCCTGGCTCTTCTCTGGCTTCCCCTAAGGTGATGTCAGCATCTGACGCTGGCAATGGCAATGGCAATGGCAATGTTATGGGAAGCAAGGATCTCGATCCAAGCACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACGCGTAAAGATATATTTTGCAAAGACACCATCGTTGAAGATTCAGATGTTGCAAAAGCGTTGATCGAATATGTTACTCGGGCTGGAATTGAGAATTTGGTTGTTGGTGCCACGACTAAAAGTGGCTTCTTGAGTTTGAATGGAATTCAATTTGCCGTTTTGGGTGGTTTTCTTATACACTTGTGCCTCAGAAGATTCAAGACGACAGATATTCCAGGCAGTGTTGTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAACTATGCGATCAGCCTCACGTCCTGCTCCCGCTTCGTCTCCTCTACGAAGTTTATTGCTGAGCCAAACGGGTATCAAACCAAATTCAGCAGAGTCACAAGTTCCTCAGATTCAAAGACCTGAAAAGCCTCCCCTTGAAGCAGCACGTAGATCTCAGGACAACATCGAGTTCAGTCTGTTAAGAGGGTCAATTAAGCAAATCGTCTTTTGGAGCAGGTCGCCATTCACTAGGAAAGGCTACAATGGAAAAATGCCAGGGGAAGTCAATCTGCCAGATACTGATATTTCTTTCGTTAGCTCGGGAAGGCCAAGTGTTGACCGATTATTCCCTACATTGTTTGACAACCTGGAAACAGGAAGGGTTCCCCCACGACTGTCCAGTGGCAATGAGGCCGAGATATATAATAGCTTTGAGTCACAGCAGTTCGGACGCAAATCATTGGATGTAAACTATCCACCTGAATTTTTATCGGTCTTCTCAGAAGGTGATAGATTGTCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAAATGAGGAGGCTGAAGCTGGAACTAAAGCAAACCATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTAACAGCTAAACAAAAGAAGTTTAAAACAAACTCTTCACATATGCTGCAGGCAATAGAGCTTCAGAGATGGAAATCTGAGGAAGAACGGAGAATAGAGGAGGCAAGACTTGCAGAGGAAGCTGCATTGGCAATGGTTGAGCAGGAAAAAGCAAAGTCTCGGGCTGCTATGGAGGCTGCTGAAGCAGCTAGAAGGATCGCTGAGTTGGAAGCACAGAAGAGAATTAACGCGGAAAAAAAAGCAATCAAGGAAGCAGAAGAGAAGAAGAAGGCATTAGATGCTTTGGCGAACAATGATGTCAGGTATCGGAAGTACTCAATCGACGAGATTGAAACTGCTACCGAGTTCTTTTCAGAATCTTTAAAGATTGGAGAAGGAGGTTATGGGCCTGTTTATAAAGGTTATTTGGACCACACACCAGTTGCAATTAAGGTCTTACGTCCGGATGCGGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTCGAAGTCCTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCATGCCCCGAATATGGCTGCTTGGTCTATGAGTTCATGGCACTTGGTAGCTTGGATGACTGCCTCTTTCGCCGGAGAGAAAACTCAAAACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATTGGTACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAGCCTCTTGTGCACCGTGATTTGAAACCGGCCAACATCTTGCTTGATCGTAACTACGTTAGCAAGATTAGCGACGTTGGTTTGGCCAGGCTTGTTCCCCCATCTATAGCAGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGTTATATCGATCCCGAGTATCAACAAACCGGCATGCTCGGTGTAAAGTCCGACATATATTCATTGGGTATCATGTTTTTGCAGTTGATTACAGCAAGGGCACCCATGGGATTGACTCACCATGTGGGAAGAGCTATTGAGAAAGGGACTTTGTCCGAAATTCTTGATCCATCCGTTACTGATTGGCCAGTTGAAGAAACGTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGACCGACCCGATCTTGGTAAGGTTGTTCTCCCAGAACTCATCAGATTTCAATCGCTAGCCGAAGCCAGCATGTACGCACCAGCGATGGATGGTGTTGGCAGCCCCATGTTCAGCTACAGTCAGGCTTCTACGAGAAGAGACGGCGAATGTTTTTCCTCACAATCTAACGATAGCCTTGGAGTCTTATCGCGCTCGGTGTTGTAG 3735 44.2 MVLMAGPDYQANQDKDGFLQILAAQGVEFLLSGEEKVSPILCAGKIICLFFSANWCRPCRTFTPQLVQLYNTLQKRGEKLEIIFISLDHDKNEFEQYFKTMPWLTVPFDAELQKQLCSEYHVDCIPSFIPLCADQILKEDDLIGFIEDYGSEVFPFTRKRMQELKAMDCAKRVEGKLEELLGNRGYNHVISRHGGKVPFKFHFGPYTQISQLIGKTIGLYFGAYWSPPSRSFITKLSKVYKEIMDKTHNHHSLEVIFVSTDRNLDEFKLNLTDMPWLAIPYEDKTRQDLYRIFDVKAIPTLVLIGANGKTSSENGRGLVSLYGAEAFPFTEERIDELEAAVKKEAEELPSNVEDIKHEHVLKLELAKAYVCDFCKRQGRFWAFSCHVCDYDLHPSCVQMRNEEKSREMWNQKQSIAKERKELATGNQLVGIAIDKDKGSQVALKWATENLLGKGQTAILIHVKLRSSSYPGSSLASPKVMSASDAGNGNGNGNVMGSKDLDPSTRDLFLPFRCFCTRKDIFCKDTIVEDSDVAKALIEYVTRAGIENLVVGATTKSGFLSLNGIQFAVLGGFLIHLCLRRFKTTDIPGSVVKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQTGIKPNSAESQVPQIQRPEKPPLEAARRSQDNIEFSLLRGSIKQIVFWSRSPFTRKGYNGKMPGEVNLPDTDISFVSSGRPSVDRLFPTLFDNLETGRVPPRLSSGNEAEIYNSFESQQFGRKSLDVNYPPEFLSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKKFKTNSSHMLQAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRAAMEAAEAARRIAELEAQKRINAEKKAIKEAEEKKKALDALANNDVRYRKYSIDEIETATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMALGSLDDCLFRRRENSKPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITARAPMGLTHHVGRAIEKGTLSEILDPSVTDWPVEETLCFAELALKCAELRRKDRPDLGKVVLPELIRFQSLAEASMYAPAMDGVGSPMFSYSQASTRRDGECFSSQSNDSLGVLSRSVL 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19813869 19825354 + Lsi08G011170.1 Lsi08g01117 669043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01117 1244 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 420 1237 - -
Lsi08g01117 1244 SMART serkin_6 926 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01117 1244 SUPERFAMILY Cysteine-rich domain 348 398 IPR046349 -
Lsi08g01117 1244 CDD STK_N 428 606 - -
Lsi08g01117 1244 SUPERFAMILY Thioredoxin-like 209 310 IPR036249 -
Lsi08g01117 1244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1045 1057 IPR008271 GO:0004672|GO:0006468
Lsi08g01117 1244 Coils Coil 774 801 - -
Lsi08g01117 1244 ProSiteProfiles Thioredoxin domain profile. 1 178 IPR013766 -
Lsi08g01117 1244 Gene3D Glutaredoxin 22 160 - -
Lsi08g01117 1244 Pfam Thioredoxin-like 214 309 IPR012336 -
Lsi08g01117 1244 Pfam Thioredoxin-like 44 129 IPR012336 -
Lsi08g01117 1244 Gene3D Glutaredoxin 204 331 - -
Lsi08g01117 1244 Pfam Protein kinase domain 928 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01117 1244 Gene3D HUPs 427 572 IPR014729 -
Lsi08g01117 1244 Gene3D Transferase(Phosphotransferase) domain 1 999 1200 - -
Lsi08g01117 1244 SUPERFAMILY Thioredoxin-like 32 148 IPR036249 -
Lsi08g01117 1244 ProSiteProfiles Protein kinase domain profile. 926 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01117 1244 Gene3D Phosphorylase Kinase; domain 1 904 998 - -
Lsi08g01117 1244 MobiDBLite consensus disorder prediction 636 657 - -
Lsi08g01117 1244 SUPERFAMILY Protein kinase-like (PK-like) 910 1186 IPR011009 -
Lsi08g01117 1244 Coils Coil 852 907 - -
Lsi08g01117 1244 PANTHER OS02G0152300 PROTEIN 420 1237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00151 Lsi-Chr8:3138742 Lsi08g01117 Lsi-Chr8:19813869 2.82E-55 dispersed
Lsi08g00152 Lsi-Chr8:3162627 Lsi08g01117 Lsi-Chr8:19813869 3.85E-29 dispersed
Lsi08g01117 Lsi-Chr8:19813869 Lsi11g01167 Lsi-Chr11:20180516 6.66E-19 dispersed
Lsi11g00824 Lsi-Chr11:10209977 Lsi08g01117 Lsi-Chr8:19813869 9.67E-08 dispersed
Lsi04g01774 Lsi-Chr4:24963360 Lsi08g01117 Lsi-Chr8:19813869 3.35E-75 transposed
Lsi07g01353 Lsi-Chr7:19711396 Lsi08g01117 Lsi-Chr8:19813869 6.43E-51 transposed
Lsi08g00856 Lsi-Chr8:16978567 Lsi08g01117 Lsi-Chr8:19813869 0 transposed
Lsi11g00823 Lsi-Chr11:10203339 Lsi08g01117 Lsi-Chr8:19813869 0 transposed
Lsi04g02207 Lsi-Chr4:29113287 Lsi08g01117 Lsi-Chr8:19813869 1.80E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83855 PF00069 Pkinase 2.30E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01117 - - csv:101214468 1280.77