Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01120 ATGACGGCACCGGTGTCGGTTGATGGGAAAGGGAAGAAGAATATTGAGAATTTGGTATCTGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTGGGGTTTGCGTTGCAGAAAGCTGGGCCGAGAATGGAGGAGATTAGGCAAAGATTGCCGACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGTCGCGGTCGGTGGCCATATAAATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTGGAAGACAATACTGTTGCTGATGAGAAATATCTAGCAAGTTTGAAGAATTCGTTGAAAAATTTGAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGTCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACGGAGCACAGCGTACCCCTTCCCATGTCTTCTTCAGCGTCTCTCGGTGAGCAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTAATTGCTAATAAACGACTCGAGAGATGCATATCTATTTATGTTGAAGTTCGTAGTTCTAATGTTGGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCTGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAACATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGATGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGTTGTTTTGCAAAGATAGCAACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGTAAGAATGATCCCATTAAGCTATTGAAGTTGTTAGATATTTTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGTGGGACGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTTATTAAGAGGGTTATCGATGGTGCAGCCGAGATTTTCTGGGAACTTCTAGTTCAGGTGGAGCTTCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTTACGAACCTTGTTAAAGCCATTGAGCAGAATCTGGACACTTGGATAAAGGCTTATGAAGATTCTACCTTGTCAAACTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACGAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACACGAACAATACAAGGATTACTATGCCGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGGGAGGGTTTGATTATGTTCTCAGGTGGGCGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATGATTGATAAAGAATTGAGGGAGAAGACATGCCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGTCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTACTGTCCCTATATCAGCCAAAGCCACTCAGATACAGCAGCCTTAAAGTTAGGCAGACCAGTGGGAAATTCAGCAATGGCGCAGCGGATCATCGTCGTTCCAACTCCATGGTTCTATAA 2049 43.92 MTAPVSVDGKGKKNIENLVSATRSLKASLEKSRALGFALQKAGPRMEEIRQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVGASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGTACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLDTWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVMIDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAADHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19849929 19851977 + Lsi08G011200.1 Lsi08g01120 669046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01120 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Lsi08g01120 682 Gene3D Exocyst complex component Exo70 133 654 - -
Lsi08g01120 682 Coils Coil 155 175 - -
Lsi08g01120 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Lsi08g01120 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi08g01120 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02843 Lsi-Chr2:34624375 Lsi08g01120 Lsi-Chr8:19849929 0 dispersed
Lsi08g01120 Lsi-Chr8:19849929 Lsi08g01534 Lsi-Chr8:23364258 1.03E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01120 K07195 - csv:101207478 1295.03