Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01132 ATGGGCGGCGATCATAAGGCCATCACTCTTGAGGAGATTAGAAACGAAGCGGTTGATCTGGAACATATTCCTATAGAGGAAGTGTTTGAACAGTTGAAATGTACAAGAGAAGGTCTGACATCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTGATGGAAGCTGCTGCCTTAATGGCTATTGTCCTGGCAAATGGCGGTGGAAGACCACCAGATTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATAAGTTTTATAGAAGAAAACAATGCTGGTAACGCGGCTGCAGCACTTATGGCCGGTCTTGCTCCCAAAACCAAGGCACGGGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCTGTTGACAAAAGAACTGCCCTTACTTATATTGACTCTAATGGAATTTGGCACCGAATCCTAAATCTTTGCAACTCTAGGGAAGACGTTAGAAGAAAGGTTCATGCAGTGATCGACAAGTTTGCAGAGCGTGGACTTCGTTCACTGGGTGTTGCAAGACAGGAAGTACCTGAAAAAACAAAAGATAGCCCTGGAGGACCATGGCAGCTTGTTGGTTTGTTGCCTCTATTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTGAACCTTGGAGTAAACGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACTGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTTGGTCAAGACAAGGATGAATCTATAGCTTCACTTCCTGTTGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACAGGTGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCGGATATTGGAATTGCTGTTGCGGATGCTACTGATGCTGCCAGAAGTGCTTCAGATATTGTCCTTACAGAACCGGGATTGAGTATTTATGCCGTTTCAATTACCATCCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTTGCTCCCTTTATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGACAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTTCTTGGAGGATACATGGCACTAATGACAGTGTTATTCTTTTGGGCTGTGAAAGATACCAACTTTTTCTCAGAAAAATTTAATGTGAAACCCTTAAAGGATAATCCTCAAGAATTGATGGCAGCCTTGTACCTACAAGTCAGCATAATAAGTCAGGCCCTTATCTTTGTTACGAGGTCTCGCAGCTGGTCGTACCTGGAACGTCCTGGACTCCTCCTAGTTGGCGCTTTCATCATTGCTCAGTTGGTGGCAACTGTGATAGCTGTTTATGCAAATTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGGTGGGCTGGTGTTATCTGGTTGTACAGCTTGGTAACATACATCCCTCTCGACATTTTGAAATTTGGAATCCGATATGCCCATAGTGGGAAGGCTTGGGACACTCTTCTAGAAAACAAGACTGCATTCACAACGAAAAAAGATTATGGAAAAGAAGAGAGAGAAGCACAGTGGGCAGCTGCACAGAGGACTCTACATGGTCTACAACCACCTGAAAACTCCAATCTCTTCCCTGAGAAAAGTAGTTATAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAACGTCGTGCTGAGGTTGCAAGGAAGGTTAAAGAGAAAAATTGGATATGA 1953 43.16 MGGDHKAITLEEIRNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKARAGIREVHFLPFNPVDKRTALTYIDSNGIWHRILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVPEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYMALMTVLFFWAVKDTNFFSEKFNVKPLKDNPQELMAALYLQVSIISQALIFVTRSRSWSYLERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARKVKEKNWI 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19941870 19951391 - Lsi08G011320.1 Lsi08g01132 669058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01132 650 Coils Coil 624 644 - -
Lsi08g01132 650 Gene3D - 222 367 IPR023214 -
Lsi08g01132 650 SUPERFAMILY HAD-like 222 372 IPR036412 -
Lsi08g01132 650 Gene3D - 622 648 - -
Lsi08g01132 650 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 305 370 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 PRINTS P-type cation-transporting ATPase superfamily signature 330 349 - -
Lsi08g01132 650 PRINTS P-type cation-transporting ATPase superfamily signature 247 257 - -
Lsi08g01132 650 PRINTS P-type cation-transporting ATPase superfamily signature 353 365 - -
Lsi08g01132 650 PRINTS P-type cation-transporting ATPase superfamily signature 225 236 - -
Lsi08g01132 650 PANTHER PLASMA MEMBRANE ATPASE 139 646 - -
Lsi08g01132 650 PANTHER PLASMA MEMBRANE ATPASE 5 139 - -
Lsi08g01132 650 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Lsi08g01132 650 PRINTS H+-transporting ATPase (proton pump) signature 302 318 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 PRINTS H+-transporting ATPase (proton pump) signature 330 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 PRINTS H+-transporting ATPase (proton pump) signature 482 503 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 PRINTS H+-transporting ATPase (proton pump) signature 187 205 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 PRINTS H+-transporting ATPase (proton pump) signature 361 386 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g01132 650 SUPERFAMILY Calcium ATPase, transmembrane domain M 371 569 IPR023298 -
Lsi08g01132 650 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 136 IPR023298 -
Lsi08g01132 650 PANTHER CALCIUM-TRANSPORTING ATPASE 139 646 - -
Lsi08g01132 650 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 111 236 IPR023299 GO:0000166
Lsi08g01132 650 Pfam haloacid dehalogenase-like hydrolase 222 344 - -
Lsi08g01132 650 Pfam Cation transporter/ATPase, N-terminus 22 85 IPR004014 -
Lsi08g01132 650 PANTHER CALCIUM-TRANSPORTING ATPASE 5 139 - -
Lsi08g01132 650 Gene3D - 370 568 - -
Lsi08g01132 650 Gene3D - 70 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01189 Lsi-Chr6:22187758 Lsi08g01132 Lsi-Chr8:19941870 0 dispersed
Lsi07g00437 Lsi-Chr7:4655089 Lsi08g01132 Lsi-Chr8:19941870 0 dispersed
Lsi08g01132 Lsi-Chr8:19941870 Lsi11g00377 Lsi-Chr11:3879425 0 dispersed
Lsi04g02191 Lsi-Chr4:28965266 Lsi08g01132 Lsi-Chr8:19941870 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01132 K01535 - csv:101213505 952.97