Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01144 ATGCCGGCCGTTGAAAGCTTGCTCAATCCTTCCGCATCCAAGCTATTTTCCTCCAAATCTTTGCTCAATCCTTCCATTTCAAGTTCCTCGATTTTCTCGCCCGCTCCGCGATTGCGCAGATTAAGTTCTTCTTCTTCGTCGCTGTCGATCAGATGTTCGGCCACTCGGCAAATGGAGGCTGTGGTTGATTCTGTTACTCCAGGGCAGTTCCGAGTTGATGTTCTCTCGGAATCACTGCCATTCATCCAGAAATTTCGAGGTAAAACGATCGTCGTCAAGTACGGAGGTGCCGCCATGAAATCGCGGTCTCTCCAGGCTTCGGTTGTTAACGATCTTGTTCTTCTGTCCTGCGTCGGCCTTCGTCCGATCCTGGTTCATGGCGGTGGACCGGAAATCAACAACTGGCTCAAACGGCTCAACATCGAGGTCGTTTTCCGCGACGGTCTTCGGGTGACCGACGCCGAGACAATGAAAATAGTATCGATGGTATTGGTCGGCGACGTGAATAAGAATCTGGTTTCGTTGATCAATAAAGCCGGAGCATCAGCCGCAGGGCTATGTGGTGTGGACGGGCGGCTACTCACGGCTCGGCCAGCTCCTAACTCGGCACAGTTAGGGTTCGTAGGCGAGGTCGCACGTGTGGACCCTACGGTTCTACAGGCACTTCTGGACAAAGGCCACATTCCAGTGGTCTCTTCGGTGGCTGCCGATGAGTCAGGGCAGATGTACAACATCAACGCGGACACCGTCGCCGGAGAATTAGCGGCGGCGCTGGGGGCGGAGAAGCTCATCTTACTGACGGATGTGGCGGGGATTCTGGAAGACCGTGACGATCCGAAAAGCTTAGTGAAACAGATAGACATTAAAGGGGTGAAGAAGATGATGGACGAGGGAAGAATCGGCGGAGGGATGATTCCGAAGGTGAATTGTTGTGTCCGATCGTTGGCTCAGGGAGTGAGGACGGCGAGTATCATTGACGGGAGACTGGAGCATTCGTTGCTGCTAGAGATCATGACAGACAATGGAGCCGGAACCATGATTATAGGATAA 1050 53.14 MPAVESLLNPSASKLFSSKSLLNPSISSSSIFSPAPRLRRLSSSSSSLSIRCSATRQMEAVVDSVTPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSRSLQASVVNDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVNKNLVSLINKAGASAAGLCGVDGRLLTARPAPNSAQLGFVGEVARVDPTVLQALLDKGHIPVVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIKGVKKMMDEGRIGGGMIPKVNCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20080716 20081765 + Lsi08G011440.1 Lsi08g01144 669070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01144 349 Hamap Acetylglutamate kinase [argB]. 87 342 IPR037528 GO:0003991|GO:0006526
Lsi08g01144 349 PANTHER BNAC04G55460D PROTEIN 44 349 - -
Lsi08g01144 349 TIGRFAM argB: acetylglutamate kinase 89 324 IPR004662 GO:0005737
Lsi08g01144 349 CDD AAK_NAGK-C 74 347 IPR041727 -
Lsi08g01144 349 Pfam Amino acid kinase family 88 325 IPR001048 -
Lsi08g01144 349 PRINTS Glutamate 5-kinase family signature 299 319 IPR001057 GO:0005524|GO:0016301
Lsi08g01144 349 PRINTS Glutamate 5-kinase family signature 246 273 IPR001057 GO:0005524|GO:0016301
Lsi08g01144 349 PRINTS Glutamate 5-kinase family signature 119 133 IPR001057 GO:0005524|GO:0016301
Lsi08g01144 349 Gene3D - 65 349 IPR036393 -
Lsi08g01144 349 PANTHER N-ACETYLGLUTAMATE SYNTHASE 44 349 - -
Lsi08g01144 349 SUPERFAMILY Carbamate kinase-like 71 348 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01144 K00930 argB; acetylglutamate kinase [EC:2.7.2.8] - csv:101203871 600.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00886 Lsi-Chr1:7150843 Lsi08g01144 Lsi-Chr8:20080716 2.63E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g258 . . . . . . . . Cmo05g00670 . . Cma05g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00587 Cpe11g00565 . . . . . . . . . . . . . . . Lsi08g01144 . Chy03g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009145 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01144 Lsi_Chr08 FPKM 2.069132 2.682055 7.983005 9.03085 8.028655 8.853413 8.19476 0.076536 0.161779 0.0