Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01145 ATGCTGAGGAAGAGAACAAGGTCAGTTCAGAAAGATCAATACAAAATGAATCAGATGAATGTCCCTTGTTCTGGTTCTGAGCTCCACCCCAAATGTAGCTCTATTTTCAAAAGATCTCACCTGTTTACTGGGTTGTCTCCTAAAGGTTTGGATTCTGATTCAGCTAAAAGTCCAACCTCCCCTCTGGATTTTTGGGTATTATCAAGTTTAGGTAACCCTCTTAGATCTCCTAGGTCATCATCCAATGAGGGGAATAGAAGGAACTGGGATTCTAGTAAAGTAGGGCTGAGCATTATAGATTCTTTAAATGATGATGATAGTAAACTATTTGGGAAAGTTCTTCGATCGTCGGATAGTAAGACCGCTCTCTTTGGACCTCGAAGTGTGGCCAAGAAATCTAATTGTCCATCACAGGCAAATCTTATCCAGGGACCTAAATCCTTGCCTAAAAACTATGCAATTTTCCAGGTACCAAAGATCAAAACTCCCATTGAACAGGGAAACTCTGATGTAATTTTTGAAATTGGAGAAACCCCGTTAGAATGTGAGCCTTTTGGAAACTACTCTCGTTCTTTTGATTCATACAGGGCGTTTGTGCCCCCATCTGGTTTAACCACCCACAGCCTCAGTAGTAGTACTGCTGCTGAGAGTGTTGCTTCTCCTCGGTTAGCTGAAGAACCTCGAGTGTCAGAGAAAGGTCCATTCACAAAACCGTGTTCGCTTTCTTTAGGCATATCCCATGACAATGGATCTAAGAGGCCTCTCTCAGCAAGTGAGATTGAGCTGTCTGAGGATTATACATGTGTAATTTCACATGGTCCGAACCCGAAAACTACTCATATTTATGGTGACTGCATTTTAGAATGTCACTCTAATTATTTGAGCTCTTCTTCTGAGAAGGAGATGGGATTTCCTCATCCTCTTAAAAGCTTGAATATCTCCACTTCATATTCCTTGACTGACTTCTTAAGCTTCTGCTACTCCTGTCACAAGAAACTGGAAGAGGGAAAAGACATCTACATTTACAGGGGGGAGAAAGCCTTCTGTAGTCTAATATGCCGTTCCCAGGAGATACTGATGGATGAAGAACTCGAGAAATCCATCGACAAAACCTCCGAAAGTTCTCCAAAGTCCAGTGCTGACCATGATGAGGACCTTTTTGAAACCAGCATTGGTGGCTTTGCATAA 1188 42.09 MLRKRTRSVQKDQYKMNQMNVPCSGSELHPKCSSIFKRSHLFTGLSPKGLDSDSAKSPTSPLDFWVLSSLGNPLRSPRSSSNEGNRRNWDSSKVGLSIIDSLNDDDSKLFGKVLRSSDSKTALFGPRSVAKKSNCPSQANLIQGPKSLPKNYAIFQVPKIKTPIEQGNSDVIFEIGETPLECEPFGNYSRSFDSYRAFVPPSGLTTHSLSSSTAAESVASPRLAEEPRVSEKGPFTKPCSLSLGISHDNGSKRPLSASEIELSEDYTCVISHGPNPKTTHIYGDCILECHSNYLSSSSEKEMGFPHPLKSLNISTSYSLTDFLSFCYSCHKKLEEGKDIYIYRGEKAFCSLICRSQEILMDEELEKSIDKTSESSPKSSADHDEDLFETSIGGFA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20091980 20094553 + Lsi08G011450.1 Lsi08g01145 669071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01145 395 MobiDBLite consensus disorder prediction 364 395 - -
Lsi08g01145 395 MobiDBLite consensus disorder prediction 210 233 - -
Lsi08g01145 395 PANTHER FCS-LIKE ZINC FINGER 11 1 392 - -
Lsi08g01145 395 ProSiteProfiles Zinc finger FLZ-type profile. 321 365 IPR007650 -
Lsi08g01145 395 Pfam zinc-finger of the FCS-type, C2-C2 317 363 IPR007650 -
Lsi08g01145 395 MobiDBLite consensus disorder prediction 364 388 - -
Lsi08g01145 395 PANTHER FCS-LIKE ZINC FINGER 11 1 392 IPR044585 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01145 - - - bhj:120075146 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02278 Lsi-Chr2:29337671 Lsi08g01145 Lsi-Chr8:20091980 3.09E-27 dispersed
Lsi08g01145 Lsi-Chr8:20091980 Lsi09g01310 Lsi-Chr9:20968871 4.56E-06 dispersed
Lsi04g02168 Lsi-Chr4:28726754 Lsi08g01145 Lsi-Chr8:20091980 2.58E-79 wgd
Lsi07g00497 Lsi-Chr7:5233647 Lsi08g01145 Lsi-Chr8:20091980 4.56E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g390 . . Bda01g00719 . . . . Bma01g02147 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1741 . . . . Chy04g00329 Cme03g01673 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01282 Cam08g1740 Cec08g1322 Cco08g1443 Clacu08g1437 . Cre08g1224 Lsi08g01145 . . Cme04g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007053 2 1 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01145 Lsi_Chr08 FPKM 0.383239 0.0 2.05125 2.020246 2.422177 1.392223 2.129567 0.0 0.0 0.0