Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01147 ATGGCTGTCAAATCAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGAACGGGAACAACTGGACCAAATGCTGTTTCTAAATCAGAAGAGCAGCGCTCTGCTGTGGCTCTACAGTCTGAATTTAATAAAAGGGCTTCTAAGATTGGGTTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTCATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGACACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACCATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCCAGGTCAGCTGCTGGTGCCCCAAGCGTACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGGCTCAACCATTGTTGCAGCAGCAGCAGCAGCAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAGAACATGGACGATACTCTGGCAAATGTGGAGGGAGCACAGGGAGCTTTGCTCAAGTATCTAAGCAGTATATCATCAAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCGTAA 1017 43.07 MAVKSAQSFRDRTLEFQNITERLKKSFSSGTGTTGPNAVSKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSVPPPPWAKASTSFSKTSPGKQVDGEAQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLSSISSNRWLMIKIFFVLIFFLMVFLFFVA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20112324 20119757 + Lsi08G011470.1 Lsi08g01147 669073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01147 338 SMART tSNARE_6 241 308 IPR000727 -
Lsi08g01147 338 CDD SNARE_syntaxin5 249 327 - -
Lsi08g01147 338 PANTHER SYNTAXIN-32-LIKE 7 337 - -
Lsi08g01147 338 MobiDBLite consensus disorder prediction 170 190 - -
Lsi08g01147 338 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Lsi08g01147 338 MobiDBLite consensus disorder prediction 209 239 - -
Lsi08g01147 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi08g01147 338 MobiDBLite consensus disorder prediction 168 239 - -
Lsi08g01147 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Lsi08g01147 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 25 IPR021538 -
Lsi08g01147 338 PANTHER SYNTAXIN 7 337 IPR045242 -
Lsi08g01147 338 MobiDBLite consensus disorder prediction 26 45 - -
Lsi08g01147 338 Gene3D - 47 301 - -
Lsi08g01147 338 Pfam SNARE domain 282 334 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00969 Lsi-Chr4:10161830 Lsi08g01147 Lsi-Chr8:20112324 2.49E-68 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01147 K08490 - csv:101203633 547.354