Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01152 ATGAGCCGTGCATTTGCTTGTCCACACACAACAGATCTGTTGAATATGATGAAAGAAATTAAGGTTGCTGTCAGAATCACACGCTCCCAGTCTAATTCCTCGAGCAGACTAGGAGCTATTTCACCCTCATTACAACTTTCACTCAAAGAATTGAGCAAACGTGGTCATACAGAAAACTCTGAACAAGCACAGCTAGATGGAAGTAATGCTTCCGCAACTATTACTGTTGGTGTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCTGTGAGAGTAATAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATCGAATCACTTGGAGATTCACCCATTAAAAGGATGGCAGAATCACAAGGTACCTCTCCTGTGATGAAGTCAGACAAAAAGGAGACAACGCAGGAGAACAAGTTTCAGAGTACCATAGGATGCAAAAATTGTGCGTTCCCCCTGCCTTCAGGATCAAACGACCACCAAATGAAAGGTCTAAAAGCTATTGAGGCTACAGTTTGTGAGAAATTAAGCCATCTCGGTACTTTGGATGCTGTTTCATACTCAAAAGATCCTCAAGCTTGTACCCTATATGCCCATAATATATATGACACCAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACTGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTTACTTGCATGTTAATCGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGTACCTTGGTACCATAAGCCTTTTCTTTTCTGGAGACTTACTATCAACATGCCATGAACCTTGTGTGGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGCGAGTACAGCTTCCTCAGGTTTCTGCCTTCATCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGAATCAACCAAATCAACCATGGAACCTGACTTTAGAGCATTATACCAATTACAATGTCTCCAAGCTAAAAACTCCAGTACTTGCCTTAGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAACGCTGTATTCCAGAAGTATAGACAACGGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCTAACCAGACAGAAACCTGA 1446 41.36 MSRAFACPHTTDLLNMMKEIKVAVRITRSQSNSSSRLGAISPSLQLSLKELSKRGHTENSEQAQLDGSNASATITVGVRRKRRAVLKDVTNMSCESNNLGCLHASKVQVQEVSQIESLGDSPIKRMAESQGTSPVMKSDKKETTQENKFQSTIGCKNCAFPLPSGSNDHQMKGLKAIEATVCEKLSHLGTLDAVSYSKDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRYLGTISLFFSGDLLSTCHEPCVEFEHLTNYLAELTLGEYSFLRFLPSSVAASVVFLARWILNQPNQPWNLTLEHYTNYNVSKLKTPVLALEDLRLNSTGCPLNAVFQKYRQRKFGSVATLTSTKSVLSAFPNQTET 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20147136 20154268 - Lsi08G011520.1 Lsi08g01152 669078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01152 481 Gene3D - 223 330 - -
Lsi08g01152 481 PIRSF Cyclin_A_B_D_E 14 481 IPR039361 -
Lsi08g01152 481 SUPERFAMILY Cyclin-like 338 469 IPR036915 -
Lsi08g01152 481 SMART Cyclin_C_2 338 468 IPR004367 -
Lsi08g01152 481 PANTHER CYCLINS 60 470 IPR039361 -
Lsi08g01152 481 CDD CYCLIN 368 423 IPR013763 -
Lsi08g01152 481 CDD CYCLIN 239 328 IPR013763 -
Lsi08g01152 481 Gene3D - 331 472 - -
Lsi08g01152 481 SMART cyclin_7 245 329 IPR013763 -
Lsi08g01152 481 SMART cyclin_7 342 437 IPR013763 -
Lsi08g01152 481 ProSitePatterns Cyclins signature. 240 271 IPR006671 -
Lsi08g01152 481 PANTHER CYCLIN-A2-4 60 470 - -
Lsi08g01152 481 Pfam Cyclin, N-terminal domain 210 336 IPR006671 -
Lsi08g01152 481 Pfam Cyclin, C-terminal domain 338 467 IPR004367 -
Lsi08g01152 481 SUPERFAMILY Cyclin-like 198 335 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00456 Lsi-Chr8:12228253 Lsi08g01152 Lsi-Chr8:20147136 6.71E-87 dispersed
Lsi08g01152 Lsi-Chr8:20147136 Lsi08g01505 Lsi-Chr8:23165205 8.79E-79 dispersed
Lsi04g00993 Lsi-Chr4:10849905 Lsi08g01152 Lsi-Chr8:20147136 5.58E-15 transposed
Lsi02g02759 Lsi-Chr2:33845487 Lsi08g01152 Lsi-Chr8:20147136 5.75E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01152 K06627 - csv:101211578 758.059