Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01158 ATGGGTTCTTGGAAAGACCAAGAAGATGATCATCATGAACAAGAAGAAGAATCGAAATGCGTATGGGTTAATGGGCCTATCATTGTAGGTGCAGGCCCATCAGGATTAGCCGCCGCCGCTTGTCTTTCACAGAATCAAATTCCTTCACTCATTCTTGAAAAATCCGATTGTATTGCTTCTCTTTGGCAGTATCGCACTTACGATCGTCTCAAACTTCATCTCCCCAAGCAATTTTGTGAGCTTCCTCTCATGGGTTTTCCTGAAAATTTCCCCAAATATCCTTCTAAAGATCAGTTCATTTCTTACATGGAATCTTACGCTTCTCATTTCTCCATCCATCCCCGTTTCAATCAGACCGTTCTCGCCGCGGAATTCGACTCCGTTTCTGGGTTTTGGAGGGTTTCTACTCAGGATTCTCAGTACATTTCGCGCTGGATCGTCATCGCTACAGGGGAAAATGCAGAGCCCGTTATTCCAGAAATTTTGGGGATTGAGCGGTTTACTCGAACCGTCGTTCATACTAGTATGTATAAGTCCGGTTCGGAATTTAAAAACCAACGGGTTCTGGTCGTCGGTTGTGGCAATTCCGGTATGGAAGTTAGTTTAGATCTCTGCAGACAAAATGCAATCCCTCATATGGTTGTTAGAAACACCGTTCATGTGTTACCGCGAGAAATGTTCGGATTCTCGACATTTGGAATAGCCATGGGGCTGATGAAATGGCTACCTCTAAGACTGGTGGATAAGATTCTTCTTTTAATAGCCAACTTGACTTTAGGCAATACTGATCATTTGGGTCTCCGACGACCGAAAACCGGTCCAATCGAGCTCAAAAACGCCACGGGAAAGACCCCGGTTCTCGACGTTGGAGCCCTGTCGCAAATTAGATCAGGAAAGATCAAGGTGATGGAAGGGGTAAAAGAGATAACAAGGAACGGAGCAAAGTTCATAGATGGACAAGAGAAAGAGTTTGATTCAATAATCTTAGCAACTGGGTACAGAAGCAATGTGCCAAGTTGGCTCAAGCAGGGGTGTGATTTTTTCACAAAAGACGGGATGCCGAACACCCCGTTTCCGGACGGGTGGAAAGGCGAGAGGGGGTTGTACACGGTTGGGTTTACTCGGAGGGGGCTACTCGGAACCGCGTCGGACGCTATGAAAATTGCGAACGACGTTGCCGAGCAATGGCGGATGGGCGGGAATAAGGATGGCAAGAATTCTTCATCTTATATTACATGGGAGGGGACACACTCAGAGCCAGATTTGCATGGTTTTATTATTGTATTATGTAATAGAGAAAATTTTCTAAAAAAAAAAACCCGTAGTGAGAATTTGGGTGGGGGCCAGTTGAGGAAGGGCAGGGGCCCACATTGTGATCTCAGTGGTATGTTGCTTTTGGTGGCAGCTTGGCTTAAGCTGACACCATGCTATGAAAACAATCGACATGTATGCAAATTGACCCAAATATTATTCAATATAGAAACACGATGGAAAATAAAAATATCATGGGCCATCTATGTAATTACGATAAAGTTTAAACCCCACATTGAAAATGCATCAGCAGATCAAGGCAGAGCGAAAGGGTATAAAAATAATTTCAAGGATAAACAACAACAAGTATCTATTTCGATCCTTCCTTATGTAATAATAATACGGCCTTACATTCTCTACACTTTCATTGCTGGAATCAGAGGCTCTGCTTCTATTCTCTTGCGTAGATTCTCCCTTCTGCACTTCTTACTAATTTCCTTCCTCTTCCTAGATTTTTCTAAGTGTTTGGATTCGAAAAAGATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGGTGAGTATATTTGGATTTTGTTTCATTTGTTTGGTTCAGTATGGAGTTGTACTGTACCATTTGCTCATGTTAGTAATGATTTTTTGAGTTATGGGGTTACAGCCATTGATGCGCCTGGAGGCTTTCTGTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAACAGCAGCAGCAGCAACCACAGCCACAACAACAACAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAGCAACAACAACAGCGAAGAGATGGAGCCCAACTCTTGAATGGAACTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCCCTTCAGAGGGATTCTCTGGATGATGCGCCTATGAAAGTAGGTATACTGCAAAGGTATGGGGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTACAACTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGTTCAAATCATGGTGGCAATAATTTAACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAGCTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCTTTTCCTCAGCTTCATCAGATGTTGACGCCGCAACACCAACAACAACTCATGCTCGCACAACAGAATTTAACATCACCTTCTGTTAATGATGATGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATGGCAAAAGATGGACTTTCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGACAACACAGACATGATCCTTAAGATAAAAATGGCTCAAATGCATCAACAACAGCAGCAACAGAATAGTAGCCAGCAGCAGCAGCAGCAGCAGCAACTTCAGCAGCATGCTCTTTCTAATCAACAATCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATTTCGTGGAAATGATCAGGTCTCAAAGAATCAGACTGGAAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCCTTGATGATGTTCAACAGTGACGGCACTGGCACTTTTACATCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTCGTGGAGGATGGGTCTCTTGATGACAATGTCGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTGGGGCGCTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGAAAATTTGAAGCCGAAAACTTCACTTGAAGAACATTCTGGCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCTCGGCTCGCAACTTCATCATTCGACCGAACAGTCAGGGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACTTTATTTGCTCTTGTGATGGTGAGGGCGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACGGGCCAGATGAGATTTCAACCTCGTCTCGGGAGATACTTTGCTGCTGCTGTAGATAATATCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCGTTACAGGGACACACCAAAATGGTTCACTCGCTTTGTTGGGATCCTTCTGGAGAGTTCCTAGCATCCGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCGGGGAATGAGGGGGAATCCATTCACGAGTTGAGCTGTAATGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGTTACCAGTCGTTAGAGCTTTGGAACACGACAGAGAACAAGACGATGACTCTTTCAGCTCATGAAGGTTTAATATCTTCCTTAGCAGTGTCCACGGCATCCGGTCTAGTTGCTTCGGCCAGCCACGACAAGTTCGTGAAACTGTGGAAGTAA 4626 44.57 MGSWKDQEDDHHEQEEESKCVWVNGPIIVGAGPSGLAAAACLSQNQIPSLILEKSDCIASLWQYRTYDRLKLHLPKQFCELPLMGFPENFPKYPSKDQFISYMESYASHFSIHPRFNQTVLAAEFDSVSGFWRVSTQDSQYISRWIVIATGENAEPVIPEILGIERFTRTVVHTSMYKSGSEFKNQRVLVVGCGNSGMEVSLDLCRQNAIPHMVVRNTVHVLPREMFGFSTFGIAMGLMKWLPLRLVDKILLLIANLTLGNTDHLGLRRPKTGPIELKNATGKTPVLDVGALSQIRSGKIKVMEGVKEITRNGAKFIDGQEKEFDSIILATGYRSNVPSWLKQGCDFFTKDGMPNTPFPDGWKGERGLYTVGFTRRGLLGTASDAMKIANDVAEQWRMGGNKDGKNSSSYITWEGTHSEPDLHGFIIVLCNRENFLKKKTRSENLGGGQLRKGRGPHCDLSGMLLLVAAWLKLTPCYENNRHVCKLTQILFNIETRWKIKISWAIYVITIKFKPHIENASADQGRAKGYKNNFKDKQQQVSISILPYVIIIRPYILYTFIAGIRGSASILLRRFSLLHFLLISFLFLDFSKCLDSKKMSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVGEYIWILFHLFGSVWSCTVPFAHVSNDFLSYGVTAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQPQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAPMKVGILQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGTTGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQMHQQQQQQNSSQQQQQQQQLQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFNSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTENLKPKTSLEEHSGMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGEGEIRYWNITNGSCAAVFKGGTGQMRFQPRLGRYFAAAVDNIVSIFDVETQARLHSLQGHTKMVHSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISSLAVSTASGLVASASHDKFVKLWK 1541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20208723 20230984 - Lsi08G011580.1 Lsi08g01158 669084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01158 1541 ProSitePatterns Trp-Asp (WD) repeats signature. 1318 1332 IPR019775 -
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1299 1334 - -
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 717 754 - -
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 773 814 - -
Lsi08g01158 1541 SUPERFAMILY WD40 repeat-like 1251 1541 IPR036322 GO:0005515
Lsi08g01158 1541 ProSiteProfiles LIS1 homology (LisH) motif profile. 605 637 IPR006594 GO:0005515
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 1052 1199 - -
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats profile. 1509 1541 IPR001680 GO:0005515
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats profile. 1424 1464 IPR001680 GO:0005515
Lsi08g01158 1541 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 598 641 IPR044716 GO:0003714
Lsi08g01158 1541 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 671 1541 IPR044716 GO:0003714
Lsi08g01158 1541 Pfam WD domain, G-beta repeat 1257 1288 IPR001680 GO:0005515
Lsi08g01158 1541 Pfam WD domain, G-beta repeat 1504 1541 IPR001680 GO:0005515
Lsi08g01158 1541 Pfam WD domain, G-beta repeat 1339 1375 IPR001680 GO:0005515
Lsi08g01158 1541 Pfam WD domain, G-beta repeat 1421 1454 IPR001680 GO:0005515
Lsi08g01158 1541 Pfam WD domain, G-beta repeat 1295 1331 IPR001680 GO:0005515
Lsi08g01158 1541 Gene3D - 25 398 IPR036188 -
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats profile. 1257 1298 IPR001680 GO:0005515
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1342 1380 - -
Lsi08g01158 1541 Gene3D - 1239 1392 IPR015943 GO:0005515
Lsi08g01158 1541 PRINTS Pyridine nucleotide disulphide reductase class-II signature 144 152 - -
Lsi08g01158 1541 PRINTS Pyridine nucleotide disulphide reductase class-II signature 183 207 - -
Lsi08g01158 1541 PRINTS Pyridine nucleotide disulphide reductase class-II signature 25 47 - -
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1509 1541 - -
Lsi08g01158 1541 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 598 641 - -
Lsi08g01158 1541 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 671 1541 - -
Lsi08g01158 1541 Pfam Pyridine nucleotide-disulphide oxidoreductase 27 218 - -
Lsi08g01158 1541 Coils Coil 751 773 - -
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats profile. 1299 1334 IPR001680 GO:0005515
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 1052 1096 - -
Lsi08g01158 1541 SMART WD40_4 1250 1289 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1335 1375 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1417 1455 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1461 1500 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1502 1541 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1292 1331 IPR001680 GO:0005515
Lsi08g01158 1541 SMART WD40_4 1378 1414 IPR001680 GO:0005515
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 873 905 - -
Lsi08g01158 1541 SUPERFAMILY FAD/NAD(P)-binding domain 184 391 IPR036188 -
Lsi08g01158 1541 SMART Lish 605 637 IPR006594 GO:0005515
Lsi08g01158 1541 CDD WD40 1253 1541 - -
Lsi08g01158 1541 Pfam LisH 607 633 IPR006594 GO:0005515
Lsi08g01158 1541 SUPERFAMILY FAD/NAD(P)-binding domain 27 216 IPR036188 -
Lsi08g01158 1541 Gene3D - 1393 1541 IPR015943 GO:0005515
Lsi08g01158 1541 ProSiteProfiles Trp-Asp (WD) repeats profile. 1342 1384 IPR001680 GO:0005515
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 1171 1199 - -
Lsi08g01158 1541 PRINTS FAD-dependent pyridine nucleotide reductase signature 26 45 - -
Lsi08g01158 1541 PRINTS FAD-dependent pyridine nucleotide reductase signature 187 205 - -
Lsi08g01158 1541 MobiDBLite consensus disorder prediction 1103 1163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01158 - - - csv:101221759 1352.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01787 Lsi-Chr5:25220588 Lsi08g01158 Lsi-Chr8:20208723 5.41E-163 dispersed
Lsi05g01831 Lsi-Chr5:25586826 Lsi08g01158 Lsi-Chr8:20208723 1.68E-28 dispersed
Lsi06g00877 Lsi-Chr6:18305743 Lsi08g01158 Lsi-Chr8:20208723 1.04E-28 dispersed
Lsi06g00908 Lsi-Chr6:18739394 Lsi08g01158 Lsi-Chr8:20208723 2.25E-17 dispersed
Lsi08g00284 Lsi-Chr8:7145772 Lsi08g01158 Lsi-Chr8:20208723 7.78E-108 dispersed
Lsi08g00743 Lsi-Chr8:15768189 Lsi08g01158 Lsi-Chr8:20208723 1.12E-29 dispersed
Lsi08g01100 Lsi-Chr8:19629326 Lsi08g01158 Lsi-Chr8:20208723 9.52E-124 dispersed
Lsi08g01158 Lsi-Chr8:20208723 Lsi09g01809 Lsi-Chr9:26901865 9.07E-161 dispersed
Lsi10g00723 Lsi-Chr10:10082823 Lsi08g01158 Lsi-Chr8:20208723 3.15E-68 dispersed
Lsi08g01158 Lsi-Chr8:20208723 Lsi05g01070 Lsi-Chr5:18234548 8.54E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g423 . . . . Bpe02g01231 . . . Cmo05g00687 Cmo12g00265 . Cma05g00655 . Car12g00294 . . . . . . . . . . . . . . . . . . . . . . . . Cme03g01659 . . . . . . . . . . . . Cma12g00313 . . Cpe11g00582 . . . . . . . . . . . . . . . Lsi08g01158 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25795 PF13738 Pyr_redox_3 2.90E-29 CL0063 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01158 Lsi_Chr08 FPKM 39.61871 34.589771 0.323327 0.127448 1.702925 1.811108 1.992449 0.332917 0.285651 0.106695