Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01161 ATGTCCAGCGCCGTCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCAGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTTGTGAAGATTCTTGTAATCGAGATTTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGAATAATTATGTCAGCTCAAGCCTCTTGGCCTGCCAAGAGAGGTTAA 549 48.09 MSSAVVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20269244 20271142 + Lsi08G011610.1 Lsi08g01161 669087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01161 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Lsi08g01161 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lsi08g01161 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lsi08g01161 182 Gene3D - 23 177 IPR035921 -
Lsi08g01161 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01161 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01161 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01161 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01161 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Lsi08g01161 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Lsi08g01161 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Lsi08g01161 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01161 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01161 Lsi-Chr8:20269244 Lsi08g01343 Lsi-Chr8:21729053 1.99E-16 dispersed
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01161 Lsi-Chr8:20269244 2.22E-20 transposed
Lsi04g02151 Lsi-Chr4:28604995 Lsi08g01161 Lsi-Chr8:20269244 2.89E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01161 K03661 - csv:101221052 325.479